Analysis of interatomic Contacts of Structural Units in PDB entry:
1RPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RPM entry

There are 2 chains in PDB entry 1RPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 879LEU 1156
B
 ALA 879LEU 1156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1RPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
885 906Right-handed alpha
Helix 2
2
A
921 926Right-handed 310
Helix 3
3
A
936 938Right-handed 310
Helix 4
4
A
976 988Right-handed 310
Helix 5
5
A
1071 1083Right-handed alpha
Helix 6
6
A
1100 1118Right-handed alpha
Helix 7
7
A
1123 1133Right-handed alpha
Helix 8
8
A
1141 1154Right-handed alpha
Helix 9
9
B
885 906Right-handed alpha
Helix 10
10
B
921 926Right-handed 310
Helix 11
11
B
936 938Right-handed 310
Helix 12
12
B
976 988Right-handed 310
Helix 13
13
B
1071 1083Right-handed alpha
Helix 14
14
B
1100 1118Right-handed alpha
Helix 15
15
B
1123 1133Right-handed alpha
Helix 16
16
B
1141 1154Right-handed alpha
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There are 2 sheets in PDB entry 1RPM. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
956 959first strand
Strand 2
A
968 971anti-parallel
Strand 3
A
1091 1094parallel
Strand 4
A
993 996parallel
Strand 5
A
1051 1058parallel
Strand 6
A
1035 1044anti-parallel
Strand 7
A
1022 1032anti-parallel
Strand 8
A
1016 1019anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
956 959first strand
Strand 2
B
968 971anti-parallel
Strand 3
B
1091 1094parallel
Strand 4
B
993 996parallel
Strand 5
B
1051 1058parallel
Strand 6
B
1035 1044anti-parallel
Strand 7
B
1022 1032anti-parallel
Strand 8
B
1016 1019anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il