Analysis of interatomic Contacts of Structural Units in PDB entry:
1RRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RRJ entry

There are 4 chains in PDB entry 1RRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A 1 T 22
C
 A 101 T 122
A
 GLN 201SER 722
A
 LEU 724PHE 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1RRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
204 208Right-handed 310
Helix 2
2
A
250 262Right-handed alpha
Helix 3
3
A
266 270Right-handed 310
Helix 4
4
A
271 286Right-handed alpha
Helix 5
5
A
287 292Right-handed alpha
Helix 6
6
A
302 317Right-handed alpha
Helix 7
7
A
320 339Right-handed alpha
Helix 8
8
A
378 381Right-handed 310
Helix 9
9
A
433 452Right-handed alpha
Helix 10
10
A
453 464Right-handed alpha
Helix 11
11
A
465 467Right-handed 310
Helix 12
12
A
469 485Right-handed alpha
Helix 13
13
A
508 510Right-handed 310
Helix 14
14
A
532 534Right-handed 310
Helix 15
15
A
544 555Right-handed alpha
Helix 16
16
A
569 581Right-handed alpha
Helix 17
17
A
586 606Right-handed alpha
Helix 18
18
A
611 630Right-handed alpha
Helix 19
19
A
639 641Right-handed 310
Helix 20
20
A
642 671Right-handed alpha
Helix 21
21
A
680 711Right-handed alpha
Helix 22
22
A
716 722Right-handed alpha
Helix 23
23
A
725 737Right-handed alpha
Helix 24
24
A
739 743Right-handed 310
Helix 25
25
A
745 752Right-handed alpha
Helix 26
26
A
752 758Right-handed alpha
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There are 5 sheets in PDB entry 1RRJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
340 343anti-parallel
Strand 3
A
346 349anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
241 242anti-parallel
Strand 3
A
300 301anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
373 374anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 405first strand
Strand 2
A
383 385parallel
Strand 3
A
414 417anti-parallel
Strand 4
A
424 427anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 518first strand
Strand 2
A
521 530anti-parallel
Strand 3
A
536 542anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il