Analysis of interatomic Contacts of Structural Units in PDB entry:
1RTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RTP entry

There are 3 chains in PDB entry 1RTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 SER 1SER 109
2
 SER 1SER 109
3
 SER 1SER 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1RTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
N1
1
1 6Right-handed alpha
Helix 2
A1
1
7 17Right-handed alpha
Helix 3
B1
1
25 33Right-handed alpha
Helix 4
C1
1
39 51Right-handed alpha
Helix 5
D1
1
59 71Right-handed alpha
Helix 6
E1
1
78 90Right-handed alpha
Helix 7
F1
1
98 108Right-handed alpha
Helix 8
P1
1
30 35Right-handed pi
Helix 9
N2
2
1 6Right-handed alpha
Helix 10
A2
2
7 17Right-handed alpha
Helix 11
B2
2
25 33Right-handed alpha
Helix 12
C2
2
39 51Right-handed alpha
Helix 13
D2
2
59 71Right-handed alpha
Helix 14
E2
2
78 90Right-handed alpha
Helix 15
F2
2
98 108Right-handed alpha
Helix 16
P2
2
30 35Right-handed pi
Helix 17
N3
3
1 6Right-handed alpha
Helix 18
A3
3
7 17Right-handed alpha
Helix 19
B3
3
25 33Right-handed alpha
Helix 20
C3
3
39 51Right-handed alpha
Helix 21
D3
3
59 71Right-handed alpha
Helix 22
E3
3
78 90Right-handed alpha
Helix 23
F3
3
98 108Right-handed alpha
Helix 24
P3
3
30 35Right-handed pi
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There are 3 sheets in PDB entry 1RTP. Click on sheet of interest to get list of strands forming it: 1, 2, 3,

There are 2 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
58 58first strand
Strand 2
1
97 97anti-parallel
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There are 2 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
58 58first strand
Strand 2
2
97 97anti-parallel
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There are 2 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
58 58first strand
Strand 2
3
97 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il