Analysis of interatomic Contacts of Structural Units in PDB entry:
1RTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RTQ entry

There is 1 chain in PDB entry 1RTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1RTQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 14Right-handed alpha
Helix 2
2
A
15 17Right-handed 310
Helix 3
3
A
18 31Right-handed alpha
Helix 4
4
A
39 58Right-handed alpha
Helix 5
5
A
118 135Right-handed alpha
Helix 6
6
A
150 154Right-handed 310
Helix 7
7
A
155 168Right-handed alpha
Helix 8
8
A
198 213Right-handed alpha
Helix 9
9
A
229 236Right-handed alpha
Helix 10
10
A
247 251Right-handed 310
Helix 11
11
A
261 265Right-handed 310
Helix 12
12
A
269 289Right-handed alpha
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There are 2 sheets in PDB entry 1RTQ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 70first strand
Strand 2
A
73 82anti-parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
87 97parallel
Strand 5
A
171 177parallel
Strand 6
A
240 241parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
190 193parallel
Strand 3
A
243 244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il