Analysis of interatomic Contacts of Structural Units in PDB entry:
1RTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RTR entry

There are 2 chains in PDB entry 1RTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 291
B
 THR 2ARG 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1RTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 19Right-handed alpha
Helix 2
2
A
29 39Right-handed alpha
Helix 3
3
A
44 57Right-handed alpha
Helix 4
4
A
60 63Right-handed 310
Helix 5
5
A
64 84Right-handed alpha
Helix 6
6
A
98 104Right-handed alpha
Helix 7
7
A
104 125Right-handed alpha
Helix 8
8
A
130 146Right-handed alpha
Helix 9
9
A
149 160Right-handed alpha
Helix 10
10
A
166 178Right-handed alpha
Helix 11
11
A
178 194Right-handed alpha
Helix 12
12
A
196 228Right-handed alpha
Helix 13
13
A
244 271Right-handed alpha
Helix 14
14
A
278 290Right-handed alpha
Helix 15
15
B
5 19Right-handed alpha
Helix 16
16
B
29 39Right-handed alpha
Helix 17
17
B
44 57Right-handed alpha
Helix 18
18
B
60 63Right-handed 310
Helix 19
19
B
64 83Right-handed alpha
Helix 20
20
B
98 104Right-handed alpha
Helix 21
21
B
104 125Right-handed alpha
Helix 22
22
B
130 146Right-handed alpha
Helix 23
23
B
149 160Right-handed alpha
Helix 24
24
B
166 178Right-handed alpha
Helix 25
25
B
178 194Right-handed alpha
Helix 26
26
B
196 222Right-handed alpha
Helix 27
27
B
244 250Right-handed alpha
Helix 28
28
B
250 272Right-handed alpha
Helix 29
29
B
278 291Right-handed alpha
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There are 2 sheets in PDB entry 1RTR. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
96 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il