Analysis of interatomic Contacts of Structural Units in PDB entry:
1RTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RTY entry

There are 3 chains in PDB entry 1RTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 22ALA 182
B
 MSE 1ARG 180
C
 LYS 22SER 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1RTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 48Right-handed alpha
Helix 2
2
A
53 76Right-handed alpha
Helix 3
3
A
86 104Right-handed alpha
Helix 4
4
A
116 143Right-handed alpha
Helix 5
5
A
146 171Right-handed alpha
Helix 6
6
B
23 49Right-handed alpha
Helix 7
7
B
53 75Right-handed alpha
Helix 8
8
B
79 83Right-handed 310
Helix 9
9
B
86 104Right-handed alpha
Helix 10
10
B
116 143Right-handed alpha
Helix 11
11
B
146 171Right-handed alpha
Helix 12
12
C
23 48Right-handed alpha
Helix 13
13
C
53 75Right-handed alpha
Helix 14
14
C
86 104Right-handed alpha
Helix 15
15
C
116 143Right-handed alpha
Helix 16
16
C
146 171Right-handed alpha
Helix 17
17
C
179 183Right-handed 310
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There are 2 sheets in PDB entry 1RTY. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
176 178anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
176 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il