Analysis of interatomic Contacts of Structural Units in PDB entry:
1RV0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1RV0 entry

There are 6 chains in PDB entry 1RV0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 5	ARG 327
I	GLY 501	PRO 660
J	ASP 5	ARG 327
K	GLY 501	PRO 660
L	ASP 5	ARG 327
M	GLY 501	PRO 660

There are 22 helices in PDB entry 1RV0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	H	60	67	Right-handed alpha
Helix 2	2	H	71	77	Right-handed 310
Helix 3	3	H	101	110	Right-handed alpha
Helix 4	4	H	122	127	Right-handed alpha
Helix 5	5	H	187	196	Right-handed alpha
Helix 6	6	I	537	559	Right-handed alpha
Helix 7	7	I	574	627	Right-handed alpha
Helix 8	8	I	645	654	Right-handed alpha
Helix 9	9	J	60	67	Right-handed alpha
Helix 10	10	J	68	77	Right-handed 310
Helix 11	11	J	101	109	Right-handed alpha
Helix 12	12	J	187	196	Right-handed alpha
Helix 13	13	K	537	559	Right-handed alpha
Helix 14	14	K	574	627	Right-handed alpha
Helix 15	15	K	645	654	Right-handed alpha
Helix 16	16	L	60	67	Right-handed alpha
Helix 17	17	L	68	75	Right-handed 310
Helix 18	18	L	101	110	Right-handed alpha
Helix 19	19	L	187	196	Right-handed alpha
Helix 20	20	M	537	559	Right-handed alpha
Helix 21	21	M	574	627	Right-handed alpha
Helix 22	22	M	645	654	Right-handed alpha

There are 35 sheets in PDB entry 1RV0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	535	536	first strand
Strand 2	I	522	524	anti-parallel
Strand 3	H	6	11	anti-parallel
Strand 4	I	637	640	anti-parallel
Strand 5	I	630	634	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	20	first strand
Strand 2	H	28	29	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	35	first strand
Strand 2	H	316	318	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	295	296	parallel
Strand 3	H	308	309	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	48	first strand
Strand 2	H	275	279	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	83	85	parallel
Strand 3	H	268	270	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	118	first strand
Strand 2	H	257	262	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	251	254	anti-parallel
Strand 5	H	151	153	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	118	first strand
Strand 2	H	257	262	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	229	237	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	141	first strand
Strand 2	H	144	146	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	169	first strand
Strand 2	H	242	247	anti-parallel
Strand 3	H	202	205	anti-parallel
Strand 4	H	210	213	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	288	289	first strand
Strand 2	H	282	283	anti-parallel
Strand 3	H	303	304	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	527	528	first strand
Strand 2	I	531	532	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	535	536	first strand
Strand 2	K	522	524	anti-parallel
Strand 3	J	6	11	anti-parallel
Strand 4	K	637	640	anti-parallel
Strand 5	K	630	634	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	20	first strand
Strand 2	J	28	29	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	35	first strand
Strand 2	J	316	318	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	38	first strand
Strand 2	J	295	296	parallel
Strand 3	J	308	309	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	49	first strand
Strand 2	J	275	280	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	57	first strand
Strand 2	J	83	85	parallel
Strand 3	J	268	270	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	112	118	first strand
Strand 2	J	257	262	anti-parallel
Strand 3	J	176	184	anti-parallel
Strand 4	J	251	254	anti-parallel
Strand 5	J	151	153	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	112	118	first strand
Strand 2	J	257	262	anti-parallel
Strand 3	J	176	184	anti-parallel
Strand 4	J	229	237	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	141	first strand
Strand 2	J	144	146	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	164	169	first strand
Strand 2	J	242	247	anti-parallel
Strand 3	J	202	205	anti-parallel
Strand 4	J	210	213	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	288	289	first strand
Strand 2	J	282	283	anti-parallel
Strand 3	J	303	304	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	535	536	first strand
Strand 2	M	522	524	anti-parallel
Strand 3	L	6	11	anti-parallel
Strand 4	M	637	640	anti-parallel
Strand 5	M	630	634	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	28	29	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	35	first strand
Strand 2	L	316	318	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	37	38	first strand
Strand 2	L	295	296	parallel
Strand 3	L	308	309	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	48	first strand
Strand 2	L	275	279	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	83	85	parallel
Strand 3	L	268	270	parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	112	118	first strand
Strand 2	L	257	262	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	251	254	anti-parallel
Strand 5	L	151	153	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	112	118	first strand
Strand 2	L	257	262	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	229	237	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	141	first strand
Strand 2	L	144	146	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	164	169	first strand
Strand 2	L	242	247	anti-parallel
Strand 3	L	202	205	anti-parallel
Strand 4	L	210	213	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	288	289	first strand
Strand 2	L	282	283	anti-parallel
Strand 3	L	303	304	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	527	528	first strand
Strand 2	M	531	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1RV0

Analysis of interatomic Contacts of Structural Units in PDB entry:
1RV0