Analysis of interatomic Contacts of Structural Units in PDB entry:
1RV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RV8 entry

There are 4 chains in PDB entry 1RV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 305
B
 MET 1ALA 305
C
 MET 1ALA 305
D
 MET 1ALA 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 1RV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
26 40Right-handed alpha
Helix 3
3
A
50 71Right-handed alpha
Helix 4
4
A
84 94Right-handed alpha
Helix 5
5
A
107 125Right-handed alpha
Helix 6
6
A
154 166Right-handed alpha
Helix 7
7
A
190 201Right-handed alpha
Helix 8
8
A
214 224Right-handed alpha
Helix 9
9
A
235 245Right-handed alpha
Helix 10
10
A
253 271Right-handed alpha
Helix 11
11
A
276 300Right-handed alpha
Helix 12
12
B
4 16Right-handed alpha
Helix 13
13
B
26 40Right-handed alpha
Helix 14
14
B
49 71Right-handed alpha
Helix 15
15
B
84 94Right-handed alpha
Helix 16
16
B
107 125Right-handed alpha
Helix 17
17
B
154 166Right-handed alpha
Helix 18
18
B
178 182Right-handed 310
Helix 19
19
B
190 201Right-handed alpha
Helix 20
20
B
214 224Right-handed alpha
Helix 21
21
B
235 246Right-handed alpha
Helix 22
22
B
253 271Right-handed alpha
Helix 23
23
B
276 300Right-handed alpha
Helix 24
24
C
4 15Right-handed alpha
Helix 25
25
C
26 40Right-handed alpha
Helix 26
26
C
50 70Right-handed alpha
Helix 27
27
C
84 94Right-handed alpha
Helix 28
28
C
107 125Right-handed alpha
Helix 29
29
C
146 152Right-handed alpha
Helix 30
30
C
154 166Right-handed alpha
Helix 31
31
C
178 182Right-handed 310
Helix 32
32
C
190 201Right-handed alpha
Helix 33
33
C
214 224Right-handed alpha
Helix 34
34
C
235 246Right-handed alpha
Helix 35
35
C
253 271Right-handed alpha
Helix 36
36
C
276 300Right-handed alpha
Helix 37
37
D
4 16Right-handed alpha
Helix 38
38
D
26 40Right-handed alpha
Helix 39
39
D
50 71Right-handed alpha
Helix 40
40
D
84 94Right-handed alpha
Helix 41
41
D
107 125Right-handed alpha
Helix 42
42
D
146 152Right-handed alpha
Helix 43
43
D
154 166Right-handed alpha
Helix 44
44
D
178 182Right-handed 310
Helix 45
45
D
190 201Right-handed alpha
Helix 46
46
D
214 223Right-handed alpha
Helix 47
47
D
235 245Right-handed alpha
Helix 48
48
D
253 271Right-handed alpha
Helix 49
49
D
276 300Right-handed alpha
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There are 4 sheets in PDB entry 1RV8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
44 49parallel
Strand 3
A
75 82parallel
Strand 4
A
98 101parallel
Strand 5
A
128 133parallel
Strand 6
A
169 172parallel
Strand 7
A
205 207parallel
Strand 8
A
247 252parallel
Strand 9
A
19 23parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
44 48parallel
Strand 3
B
75 82parallel
Strand 4
B
98 101parallel
Strand 5
B
128 133parallel
Strand 6
B
169 172parallel
Strand 7
B
205 207parallel
Strand 8
B
247 252parallel
Strand 9
B
19 23parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 23first strand
Strand 2
C
44 49parallel
Strand 3
C
75 82parallel
Strand 4
C
98 101parallel
Strand 5
C
128 133parallel
Strand 6
C
169 172parallel
Strand 7
C
205 207parallel
Strand 8
C
247 252parallel
Strand 9
C
19 23parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 80first strand
Strand 2
D
44 49parallel
Strand 3
D
19 23parallel
Strand 4
D
247 252parallel
Strand 5
D
205 207parallel
Strand 6
D
169 172parallel
Strand 7
D
128 133parallel
Strand 8
D
98 100parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il