Analysis of interatomic Contacts of Structural Units in PDB entry:
1RV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RV9 entry

There is 1 chain in PDB entry 1RV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 15GLY 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1RV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 45Right-handed 310
Helix 2
2
A
56 72Right-handed alpha
Helix 3
3
A
90 92Right-handed 310
Helix 4
4
A
137 144Right-handed alpha
Helix 5
5
A
144 154Right-handed alpha
Helix 6
6
A
156 158Right-handed 310
Helix 7
7
A
169 172Right-handed 310
Helix 8
8
A
176 185Right-handed alpha
Helix 9
9
A
187 192Right-handed 310
Helix 10
10
A
205 218Right-handed alpha
Helix 11
11
A
238 243Right-handed alpha
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There are 3 sheets in PDB entry 1RV9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
248 254anti-parallel
Strand 4
A
110 115anti-parallel
Strand 5
A
75 76parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
101 104parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
160 164anti-parallel
Strand 6
A
221 224parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
194 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il