Analysis of interatomic Contacts of Structural Units in PDB entry:
1RVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RVA entry

There are 4 chains in PDB entry 1RVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 T 11
D
 A 1 T 11
A
 SER 2LYS 245
B
 SER 2LYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1RVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
36 59Right-handed alpha
Helix 3
3
A
124 126Right-handed 310
Helix 4
4
A
144 149Right-handed 310
Helix 5
5
A
152 159Right-handed 310
Helix 6
6
A
173 176Right-handed alpha
Helix 7
7
A
195 202Right-handed alpha
Helix 8
8
A
208 218Right-handed alpha
Helix 9
9
A
222 227Right-handed alpha
Helix 10
10
A
232 242Right-handed alpha
Helix 11
11
B
2 18Right-handed alpha
Helix 12
12
B
36 59Right-handed alpha
Helix 13
13
B
124 126Right-handed 310
Helix 14
14
B
154 159Right-handed 310
Helix 15
15
B
173 176Right-handed alpha
Helix 16
16
B
195 202Right-handed alpha
Helix 17
17
B
208 218Right-handed alpha
Helix 18
18
B
222 227Right-handed alpha
Helix 19
19
B
232 242Right-handed alpha
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There are 5 sheets in PDB entry 1RVA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
20 25anti-parallel
Strand 3
B
20 25anti-parallel
Strand 4
B
29 32anti-parallel
Strand 5
B
151 152anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
86 96anti-parallel
Strand 4
A
128 140parallel
Strand 5
A
163 172anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
188 191anti-parallel
Strand 3
A
177 183anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
86 96anti-parallel
Strand 4
B
128 140parallel
Strand 5
B
163 172anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
188 191anti-parallel
Strand 3
B
177 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il