Analysis of interatomic Contacts of Structural Units in PDB entry:
1RVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RVF entry

There are 6 chains in PDB entry 1RVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 THR 17TYR 289
2
 GLY 8GLN 262
3
 GLY 1GLU 236
4
 ILE 29ASN 68
L
 GLN 1ALA 111
H
 GLN 1SER 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1RVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
37 39Right-handed 310
Helix 2
2
1
47 49Right-handed 310
Helix 3
3
1
94 96Right-handed 310
Helix 4
4
1
110 118Right-handed alpha
Helix 5
5
1
167 169Right-handed 310
Helix 6
6
1
215 217Right-handed 310
Helix 7
7
2
34 36Right-handed 310
Helix 8
8
2
44 46Right-handed 310
Helix 9
9
2
57 59Right-handed 310
Helix 10
10
2
92 95Right-handed alpha
Helix 11
11
2
144 146Right-handed 310
Helix 12
12
2
178 183Right-handed 310
Helix 13
13
3
43 48Right-handed 310
Helix 14
14
3
91 94Right-handed 310
Helix 15
15
3
96 103Right-handed alpha
Helix 16
16
3
142 147Right-handed alpha
Helix 17
17
4
50 53Right-handed alpha
Helix 18
18
H
29 31Right-handed 310
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There are 14 sheets in PDB entry 1RVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
121 123first strand
Strand 2
1
251 253anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
183 185first strand
Strand 2
1
129 135anti-parallel
Strand 3
1
237 246anti-parallel
Strand 4
1
74 84anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
148 153first strand
Strand 2
1
223 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
69 72first strand
Strand 2
2
237 240anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
78 82first strand
Strand 2
2
218 222anti-parallel
Strand 3
2
125 128anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
105 107first strand
Strand 2
2
245 247anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
69 72first strand
Strand 2
3
204 212anti-parallel
Strand 3
3
111 117anti-parallel
Strand 4
3
160 165anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
106 108first strand
Strand 2
3
218 220anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
126 130first strand
Strand 2
3
150 154anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
85 87first strand
Strand 2
L
35 38anti-parallel
Strand 3
L
45 48anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
33 39anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 21first strand
Strand 2
H
79 82anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
49 52first strand
Strand 2
H
56 59anti-parallel
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