Analysis of interatomic Contacts of Structural Units in PDB entry:
1RVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RVU entry

There are 2 chains in PDB entry 1RVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 15PHE 484
B
 TRP 15PHE 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 1RVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 24Right-handed alpha
Helix 2
2
A
25 30Right-handed alpha
Helix 3
3
A
30 47Right-handed alpha
Helix 4
4
A
58 66Right-handed alpha
Helix 5
5
A
67 71Right-handed 310
Helix 6
6
A
86 104Right-handed alpha
Helix 7
7
A
119 132Right-handed alpha
Helix 8
8
A
143 146Right-handed 310
Helix 9
9
A
148 152Right-handed 310
Helix 10
10
A
161 167Right-handed alpha
Helix 11
11
A
182 194Right-handed alpha
Helix 12
12
A
210 221Right-handed alpha
Helix 13
13
A
232 238Right-handed alpha
Helix 14
14
A
243 247Right-handed 310
Helix 15
15
A
256 260Right-handed 310
Helix 16
16
A
287 297Right-handed alpha
Helix 17
17
A
305 320Right-handed alpha
Helix 18
18
A
321 345Right-handed alpha
Helix 19
19
A
364 367Right-handed 310
Helix 20
20
A
369 380Right-handed alpha
Helix 21
21
A
405 411Right-handed alpha
Helix 22
22
A
414 438Right-handed alpha
Helix 23
23
A
444 454Right-handed alpha
Helix 24
24
A
455 474Right-handed alpha
Helix 25
25
B
16 24Right-handed alpha
Helix 26
26
B
25 30Right-handed alpha
Helix 27
27
B
30 47Right-handed alpha
Helix 28
28
B
58 66Right-handed alpha
Helix 29
29
B
67 71Right-handed 310
Helix 30
30
B
86 104Right-handed alpha
Helix 31
31
B
119 132Right-handed alpha
Helix 32
32
B
143 146Right-handed 310
Helix 33
33
B
148 152Right-handed 310
Helix 34
34
B
161 167Right-handed alpha
Helix 35
35
B
182 194Right-handed alpha
Helix 36
36
B
210 221Right-handed alpha
Helix 37
37
B
232 238Right-handed alpha
Helix 38
38
B
243 247Right-handed 310
Helix 39
39
B
256 260Right-handed 310
Helix 40
40
B
287 297Right-handed alpha
Helix 41
41
B
305 320Right-handed alpha
Helix 42
42
B
321 345Right-handed alpha
Helix 43
43
B
351 353Right-handed 310
Helix 44
44
B
364 367Right-handed 310
Helix 45
45
B
369 380Right-handed alpha
Helix 46
46
B
405 411Right-handed alpha
Helix 47
47
B
414 438Right-handed alpha
Helix 48
48
B
444 455Right-handed alpha
Helix 49
49
B
455 474Right-handed alpha
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There are 8 sheets in PDB entry 1RVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
382 383parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
80 81anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
265 270anti-parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
224 228parallel
Strand 5
A
197 200parallel
Strand 6
A
137 141parallel
Strand 7
A
168 172parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
358 362anti-parallel
Strand 3
A
400 404anti-parallel
Strand 4
A
385 387anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
382 383parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
265 270anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
224 228parallel
Strand 5
B
197 200parallel
Strand 6
B
137 141parallel
Strand 7
B
168 172parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 275first strand
Strand 2
B
284 285anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
358 362anti-parallel
Strand 3
B
400 404anti-parallel
Strand 4
B
385 387anti-parallel
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