Analysis of interatomic Contacts of Structural Units in PDB entry:
1RVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RVZ entry

There are 12 chains in PDB entry 1RVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 5ARG 327
B
GLY 501PRO 660
C
ASP 5ARG 327
D
GLY 501PRO 660
E
ASP 5ARG 327
F
GLY 501PRO 660
G
ASP 5ARG 327
H
GLY 501PRO 660
I
ASP 5ARG 327
J
GLY 501PRO 660
K
ASP 5ARG 327
L
GLY 501PRO 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1RVZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
60 67Right-handed alpha
Helix 2
2
A
68 75Right-handed 310
Helix 3
3
A
101 110Right-handed alpha
Helix 4
4
A
122 127Right-handed alpha
Helix 5
5
A
187 196Right-handed alpha
Helix 6
6
B
537 559Right-handed alpha
Helix 7
7
B
574 627Right-handed alpha
Helix 8
8
B
645 654Right-handed alpha
Helix 9
9
C
60 67Right-handed alpha
Helix 10
10
C
68 75Right-handed 310
Helix 11
11
C
101 110Right-handed alpha
Helix 12
12
C
122 127Right-handed alpha
Helix 13
13
C
187 196Right-handed alpha
Helix 14
14
D
537 559Right-handed alpha
Helix 15
15
D
574 624Right-handed alpha
Helix 16
16
D
646 654Right-handed alpha
Helix 17
17
E
60 67Right-handed alpha
Helix 18
18
E
68 75Right-handed 310
Helix 19
19
E
101 110Right-handed alpha
Helix 20
20
E
122 127Right-handed alpha
Helix 21
21
E
187 196Right-handed alpha
Helix 22
22
F
537 559Right-handed alpha
Helix 23
23
F
574 627Right-handed alpha
Helix 24
24
F
645 654Right-handed alpha
Helix 25
25
G
60 67Right-handed alpha
Helix 26
26
G
68 75Right-handed 310
Helix 27
27
G
101 110Right-handed alpha
Helix 28
28
G
122 127Right-handed alpha
Helix 29
29
G
187 196Right-handed alpha
Helix 30
30
H
537 559Right-handed alpha
Helix 31
31
H
574 626Right-handed alpha
Helix 32
32
H
646 654Right-handed alpha
Helix 33
33
I
60 67Right-handed alpha
Helix 34
34
I
68 75Right-handed 310
Helix 35
35
I
101 110Right-handed alpha
Helix 36
36
I
122 127Right-handed alpha
Helix 37
37
I
187 196Right-handed alpha
Helix 38
38
J
537 559Right-handed alpha
Helix 39
39
J
574 627Right-handed alpha
Helix 40
40
J
645 654Right-handed alpha
Helix 41
41
K
60 67Right-handed alpha
Helix 42
42
K
68 75Right-handed 310
Helix 43
43
K
101 110Right-handed alpha
Helix 44
44
K
122 127Right-handed alpha
Helix 45
45
K
187 196Right-handed alpha
Helix 46
46
L
537 559Right-handed alpha
Helix 47
47
L
574 627Right-handed alpha
Helix 48
48
L
645 654Right-handed alpha
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There are 66 sheets in PDB entry 1RVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
533 536first strand
Strand 2
B
522 526anti-parallel
Strand 3
A
6 11anti-parallel
Strand 4
B
637 640anti-parallel
Strand 5
B
630 632anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 20first strand
Strand 2
A
28 29anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
33 35first strand
Strand 2
A
316 318anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
37 38first strand
Strand 2
A
295 296parallel
Strand 3
A
308 309parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
45 49first strand
Strand 2
A
274 280parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
54 57first strand
Strand 2
A
83 85parallel
Strand 3
A
268 270parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 119first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
151 153anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 119first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
229 237anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 141first strand
Strand 2
A
144 146anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
210 213anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
287 289first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
302 306anti-parallel
Strand 4
B
562 565anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
531 536first strand
Strand 2
D
522 528anti-parallel
Strand 3
C
6 11anti-parallel
Strand 4
D
637 640anti-parallel
Strand 5
D
630 632anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
19 20first strand
Strand 2
C
28 29anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
33 35first strand
Strand 2
C
316 318anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
37 38first strand
Strand 2
C
295 296parallel
Strand 3
C
308 309parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
46 49first strand
Strand 2
C
275 280parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 55first strand
Strand 2
C
83 85parallel
Strand 3
C
268 270parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
112 119first strand
Strand 2
C
256 262anti-parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
251 254anti-parallel
Strand 5
C
151 153anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
112 119first strand
Strand 2
C
256 262anti-parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
229 237anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
136 141first strand
Strand 2
C
144 146anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
164 169first strand
Strand 2
C
242 247anti-parallel
Strand 3
C
202 205anti-parallel
Strand 4
C
210 213anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
288 289first strand
Strand 2
C
282 283anti-parallel
Strand 3
C
302 306anti-parallel
Strand 4
D
562 565anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
534 536first strand
Strand 2
F
522 526anti-parallel
Strand 3
E
6 11anti-parallel
Strand 4
F
637 640anti-parallel
Strand 5
F
630 632anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
18 20first strand
Strand 2
E
28 30anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
33 35first strand
Strand 2
E
316 318anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
37 38first strand
Strand 2
E
295 296parallel
Strand 3
E
308 309parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
46 49first strand
Strand 2
E
275 280parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
54 57first strand
Strand 2
E
83 85parallel
Strand 3
E
268 270parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
112 119first strand
Strand 2
E
256 262anti-parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
251 254anti-parallel
Strand 5
E
151 153anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
112 119first strand
Strand 2
E
256 262anti-parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
229 237anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
136 141first strand
Strand 2
E
144 146anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
164 169first strand
Strand 2
E
242 247anti-parallel
Strand 3
E
202 205anti-parallel
Strand 4
E
210 213anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
288 289first strand
Strand 2
E
282 283anti-parallel
Strand 3
E
303 304anti-parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
534 536first strand
Strand 2
H
522 527anti-parallel
Strand 3
G
6 11anti-parallel
Strand 4
H
637 640anti-parallel
Strand 5
H
630 632anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
18 20first strand
Strand 2
G
28 30anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
33 35first strand
Strand 2
G
316 318anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
37 38first strand
Strand 2
G
295 296parallel
Strand 3
G
308 309parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
46 49first strand
Strand 2
G
275 280parallel
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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
54 57first strand
Strand 2
G
83 85parallel
Strand 3
G
268 270parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
112 119first strand
Strand 2
G
256 262anti-parallel
Strand 3
G
176 184anti-parallel
Strand 4
G
251 254anti-parallel
Strand 5
G
151 153anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
112 119first strand
Strand 2
G
256 262anti-parallel
Strand 3
G
176 184anti-parallel
Strand 4
G
229 237anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
136 141first strand
Strand 2
G
144 146anti-parallel
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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
164 169first strand
Strand 2
G
242 247anti-parallel
Strand 3
G
202 205anti-parallel
Strand 4
G
210 213anti-parallel
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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
288 289first strand
Strand 2
G
282 283anti-parallel
Strand 3
G
302 306anti-parallel
Strand 4
H
562 565anti-parallel
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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
534 536first strand
Strand 2
J
522 525anti-parallel
Strand 3
I
6 11anti-parallel
Strand 4
J
637 640anti-parallel
Strand 5
J
630 632anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
19 20first strand
Strand 2
I
28 29anti-parallel
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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
33 35first strand
Strand 2
I
316 318anti-parallel
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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
37 38first strand
Strand 2
I
295 296parallel
Strand 3
I
308 309parallel
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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
46 49first strand
Strand 2
I
275 280parallel
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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
54 57first strand
Strand 2
I
83 85parallel
Strand 3
I
268 270parallel
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There are 5 strands in AY sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
112 119first strand
Strand 2
I
256 262anti-parallel
Strand 3
I
176 184anti-parallel
Strand 4
I
251 254anti-parallel
Strand 5
I
151 153anti-parallel
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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
112 119first strand
Strand 2
I
256 262anti-parallel
Strand 3
I
176 184anti-parallel
Strand 4
I
229 237anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
136 141first strand
Strand 2
I
144 146anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
164 169first strand
Strand 2
I
242 247anti-parallel
Strand 3
I
202 205anti-parallel
Strand 4
I
210 213anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
288 289first strand
Strand 2
I
282 283anti-parallel
Strand 3
I
302 306anti-parallel
Strand 4
J
562 565anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
534 536first strand
Strand 2
L
522 526anti-parallel
Strand 3
K
6 11anti-parallel
Strand 4
L
637 640anti-parallel
Strand 5
L
630 632anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
19 20first strand
Strand 2
K
28 29anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
33 35first strand
Strand 2
K
316 318anti-parallel
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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
37 38first strand
Strand 2
K
295 296parallel
Strand 3
K
308 309parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
45 49first strand
Strand 2
K
274 280parallel
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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
54 55first strand
Strand 2
K
83 85parallel
Strand 3
K
268 270parallel
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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
112 119first strand
Strand 2
K
256 262anti-parallel
Strand 3
K
176 184anti-parallel
Strand 4
K
251 254anti-parallel
Strand 5
K
151 153anti-parallel
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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
112 119first strand
Strand 2
K
256 262anti-parallel
Strand 3
K
176 184anti-parallel
Strand 4
K
229 237anti-parallel
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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
136 141first strand
Strand 2
K
144 146anti-parallel
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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
164 169first strand
Strand 2
K
242 247anti-parallel
Strand 3
K
202 205anti-parallel
Strand 4
K
210 213anti-parallel
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There are 4 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
287 289first strand
Strand 2
K
282 284anti-parallel
Strand 3
K
302 306anti-parallel
Strand 4
L
562 565anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il