Analysis of interatomic Contacts of Structural Units in PDB entry:
1RXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RXD entry

There are 3 chains in PDB entry 1RXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8PHE 159
B
 PRO 8PHE 159
C
 PRO 8PHE 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1RXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 27Right-handed 310
Helix 2
2
A
28 39Right-handed alpha
Helix 3
3
A
54 60Right-handed alpha
Helix 4
4
A
76 94Right-handed alpha
Helix 5
5
A
110 121Right-handed alpha
Helix 6
6
A
124 134Right-handed alpha
Helix 7
7
A
141 151Right-handed alpha
Helix 8
8
B
28 39Right-handed alpha
Helix 9
9
B
54 60Right-handed alpha
Helix 10
10
B
76 94Right-handed alpha
Helix 11
11
B
110 121Right-handed alpha
Helix 12
12
B
124 134Right-handed alpha
Helix 13
13
B
141 149Right-handed alpha
Helix 14
14
C
28 40Right-handed alpha
Helix 15
15
C
54 60Right-handed alpha
Helix 16
16
C
76 94Right-handed alpha
Helix 17
17
C
110 121Right-handed alpha
Helix 18
18
C
124 134Right-handed alpha
Helix 19
19
C
141 151Right-handed alpha
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There are 3 sheets in PDB entry 1RXD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
41 46parallel
Strand 5
A
63 66parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
16 20anti-parallel
Strand 3
B
98 102parallel
Strand 4
B
41 46parallel
Strand 5
B
63 66parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
16 20anti-parallel
Strand 3
C
98 102parallel
Strand 4
C
41 46parallel
Strand 5
C
63 66parallel
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