Analysis of interatomic Contacts of Structural Units in PDB entry:
1RY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RY6 entry

There is 1 chain in PDB entry 1RY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1RY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 18Right-handed alpha
Helix 2
2
A
63 72Right-handed alpha
Helix 3
3
A
72 83Right-handed alpha
Helix 4
4
A
97 104Right-handed alpha
Helix 5
5
A
115 132Right-handed alpha
Helix 6
6
A
172 176Right-handed 310
Helix 7
7
A
183 201Right-handed alpha
Helix 8
8
A
207 212Right-handed 310
Helix 9
9
A
241 248Right-handed 310
Helix 10
10
A
250 275Right-handed alpha
Helix 11
11
A
282 285Right-handed 310
Helix 12
12
A
286 292Right-handed alpha
Helix 13
13
A
293 297Right-handed 310
Helix 14
14
A
311 313Right-handed 310
Helix 15
15
A
314 329Right-handed alpha
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There are 3 sheets in PDB entry 1RY6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
2 8parallel
Strand 3
A
301 308parallel
Strand 4
A
85 91parallel
Strand 5
A
227 236parallel
Strand 6
A
213 222anti-parallel
Strand 7
A
137 147anti-parallel
Strand 8
A
150 153anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
2 8parallel
Strand 3
A
301 308parallel
Strand 4
A
85 91parallel
Strand 5
A
227 236parallel
Strand 6
A
213 222anti-parallel
Strand 7
A
137 147anti-parallel
Strand 8
A
179 181anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
44 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il