Analysis of interatomic Contacts of Structural Units in PDB entry:
1RYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RYC entry

There is 1 chain in PDB entry 1RYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4LEU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1RYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
15 33Right-handed alpha
Helix 2
B
A
42 54Right-handed alpha
Helix 3
B1
A
73 78Right-handed alpha
Helix 4
C
A
84 99Right-handed alpha
Helix 5
D
A
103 119Right-handed alpha
Helix 6
E
A
150 158Right-handed alpha
Helix 7
F
A
164 177Right-handed alpha
Helix 8
F1
A
181 186Right-handed alpha
Helix 9
G
A
201 209Right-handed alpha
Helix 10
H
A
232 240Right-handed alpha
Helix 11
I
A
241 253Right-handed alpha
Helix 12
J
A
255 272Right-handed alpha
Helix 13
J1
A
288 293Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1RYC.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
229 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il