Analysis of interatomic Contacts of Structural Units in PDB entry:
1RYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1RYE entry

There are 4 chains in PDB entry 1RYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 26	TYR 381
B	ALA 1	TYR 381
C	ARG 30	TYR 381
D	ALA 1	TYR 381

There are 70 helices in PDB entry 1RYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	40	46	Right-handed alpha
Helix 2	2	A	46	52	Right-handed alpha
Helix 3	3	A	66	78	Right-handed alpha
Helix 4	4	A	80	82	Right-handed 310
Helix 5	5	A	89	96	Right-handed 310
Helix 6	6	A	107	109	Right-handed 310
Helix 7	7	A	110	120	Right-handed alpha
Helix 8	8	A	134	149	Right-handed alpha
Helix 9	9	A	156	160	Right-handed 310
Helix 10	10	A	161	173	Right-handed alpha
Helix 11	11	A	194	199	Right-handed alpha
Helix 12	12	A	202	207	Right-handed alpha
Helix 13	13	A	209	214	Right-handed alpha
Helix 14	14	A	214	227	Right-handed alpha
Helix 15	15	A	243	247	Right-handed 310
Helix 16	16	A	323	338	Right-handed alpha
Helix 17	17	A	345	366	Right-handed alpha
Helix 18	18	B	4	9	Right-handed alpha
Helix 19	19	B	40	46	Right-handed alpha
Helix 20	20	B	46	51	Right-handed alpha
Helix 21	21	B	52	54	Right-handed 310
Helix 22	22	B	66	78	Right-handed alpha
Helix 23	23	B	88	95	Right-handed 310
Helix 24	24	B	107	109	Right-handed 310
Helix 25	25	B	110	120	Right-handed alpha
Helix 26	26	B	134	148	Right-handed alpha
Helix 27	27	B	156	160	Right-handed 310
Helix 28	28	B	161	173	Right-handed alpha
Helix 29	29	B	194	198	Right-handed 310
Helix 30	30	B	202	207	Right-handed alpha
Helix 31	31	B	209	214	Right-handed alpha
Helix 32	32	B	214	227	Right-handed alpha
Helix 33	33	B	243	247	Right-handed 310
Helix 34	34	B	323	338	Right-handed alpha
Helix 35	35	B	345	366	Right-handed alpha
Helix 36	36	C	40	46	Right-handed alpha
Helix 37	37	C	46	52	Right-handed alpha
Helix 38	38	C	66	77	Right-handed alpha
Helix 39	39	C	80	82	Right-handed 310
Helix 40	40	C	88	95	Right-handed 310
Helix 41	41	C	107	109	Right-handed 310
Helix 42	42	C	110	120	Right-handed alpha
Helix 43	43	C	134	148	Right-handed alpha
Helix 44	44	C	156	160	Right-handed 310
Helix 45	45	C	161	173	Right-handed alpha
Helix 46	46	C	194	199	Right-handed alpha
Helix 47	47	C	202	207	Right-handed alpha
Helix 48	48	C	209	214	Right-handed alpha
Helix 49	49	C	214	227	Right-handed alpha
Helix 50	50	C	243	247	Right-handed 310
Helix 51	51	C	323	338	Right-handed alpha
Helix 52	52	C	345	366	Right-handed alpha
Helix 53	53	D	4	10	Right-handed alpha
Helix 54	54	D	40	46	Right-handed alpha
Helix 55	55	D	46	51	Right-handed alpha
Helix 56	56	D	52	54	Right-handed 310
Helix 57	57	D	66	78	Right-handed alpha
Helix 58	58	D	88	96	Right-handed 310
Helix 59	59	D	107	109	Right-handed 310
Helix 60	60	D	110	121	Right-handed alpha
Helix 61	61	D	134	148	Right-handed alpha
Helix 62	62	D	156	160	Right-handed 310
Helix 63	63	D	161	173	Right-handed alpha
Helix 64	64	D	194	201	Right-handed 310
Helix 65	65	D	202	207	Right-handed alpha
Helix 66	66	D	209	214	Right-handed alpha
Helix 67	67	D	214	227	Right-handed alpha
Helix 68	68	D	243	247	Right-handed 310
Helix 69	69	D	323	338	Right-handed alpha
Helix 70	70	D	345	366	Right-handed alpha

There are 8 sheets in PDB entry 1RYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	58	63	parallel
Strand 3	A	33	37	parallel
Strand 4	A	101	104	parallel
Strand 5	A	124	128	parallel
Strand 6	A	152	155	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	276	283	anti-parallel
Strand 4	A	179	187	anti-parallel
Strand 5	A	264	270	parallel
Strand 6	A	252	259	anti-parallel
Strand 7	A	230	238	anti-parallel
Strand 8	A	369	370	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	57	63	parallel
Strand 3	B	32	37	parallel
Strand 4	B	101	104	parallel
Strand 5	B	124	128	parallel
Strand 6	B	152	155	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	313	first strand
Strand 2	B	301	304	anti-parallel
Strand 3	B	287	290	anti-parallel
Strand 4	B	276	283	anti-parallel
Strand 5	B	179	187	anti-parallel
Strand 6	B	264	270	parallel
Strand 7	B	252	259	anti-parallel
Strand 8	B	230	238	anti-parallel
Strand 9	B	369	370	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	57	63	parallel
Strand 3	C	32	37	parallel
Strand 4	C	101	104	parallel
Strand 5	C	124	128	parallel
Strand 6	C	152	155	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	304	first strand
Strand 2	C	287	290	anti-parallel
Strand 3	C	276	283	anti-parallel
Strand 4	C	179	187	anti-parallel
Strand 5	C	264	270	parallel
Strand 6	C	252	259	anti-parallel
Strand 7	C	230	238	anti-parallel
Strand 8	C	369	370	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	57	63	parallel
Strand 3	D	32	37	parallel
Strand 4	D	101	104	parallel
Strand 5	D	124	127	parallel
Strand 6	D	152	154	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	312	first strand
Strand 2	D	301	304	anti-parallel
Strand 3	D	287	290	anti-parallel
Strand 4	D	276	283	anti-parallel
Strand 5	D	179	187	anti-parallel
Strand 6	D	264	270	parallel
Strand 7	D	252	259	anti-parallel
Strand 8	D	230	238	anti-parallel
Strand 9	D	369	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1RYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
1RYE