Analysis of interatomic Contacts of Structural Units in PDB entry:
1RYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RYR entry

There are 3 chains in PDB entry 1RYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 1801 C 1813
C
 T 1903 C 1918
A
 MET 1ILE 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1RYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
21 24Right-handed 310
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
77 93Right-handed alpha
Helix 6
6
A
112 115Right-handed 310
Helix 7
7
A
117 137Right-handed alpha
Helix 8
8
A
147 159Right-handed alpha
Helix 9
9
A
167 178Right-handed alpha
Helix 10
10
A
179 183Right-handed 310
Helix 11
11
A
187 196Right-handed alpha
Helix 12
12
A
201 207Right-handed 310
Helix 13
13
A
209 218Right-handed alpha
Helix 14
14
A
218 230Right-handed alpha
Helix 15
15
A
257 277Right-handed alpha
Helix 16
16
A
307 326Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1RYR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
163 165parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
72 75parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 255first strand
Strand 2
A
330 340anti-parallel
Strand 3
A
281 290anti-parallel
Strand 4
A
295 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il