Analysis of interatomic Contacts of Structural Units in PDB entry:
1S0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1S0W entry

There are 4 chains in PDB entry 1S0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 26TRP 288
C
 ALA 1001VAL 1165
B
 HIS 26TRP 288
D
 ALA 1001VAL 1165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 1S0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
71 86Right-handed alpha
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
106 112Right-handed alpha
Helix 5
5
A
119 130Right-handed alpha
Helix 6
6
A
131 142Right-handed alpha
Helix 7
7
A
144 155Right-handed alpha
Helix 8
8
A
167 171Right-handed 310
Helix 9
9
A
182 196Right-handed alpha
Helix 10
10
A
200 213Right-handed alpha
Helix 11
11
A
220 225Right-handed 310
Helix 12
12
A
269 287Right-handed alpha
Helix 13
13
C
1005 1012Right-handed alpha
Helix 14
14
C
1017 1026Right-handed alpha
Helix 15
15
C
1033 1037Right-handed 310
Helix 16
16
C
1084 1090Right-handed alpha
Helix 17
17
C
1096 1105Right-handed alpha
Helix 18
18
B
26 41Right-handed alpha
Helix 19
19
B
71 86Right-handed alpha
Helix 20
20
B
98 102Right-handed 310
Helix 21
21
B
106 112Right-handed alpha
Helix 22
22
B
119 129Right-handed alpha
Helix 23
23
B
131 143Right-handed alpha
Helix 24
24
B
144 155Right-handed alpha
Helix 25
25
B
167 171Right-handed 310
Helix 26
26
B
182 196Right-handed alpha
Helix 27
27
B
200 213Right-handed alpha
Helix 28
28
B
220 225Right-handed 310
Helix 29
29
B
269 287Right-handed alpha
Helix 30
30
D
1005 1012Right-handed alpha
Helix 31
31
D
1017 1026Right-handed alpha
Helix 32
32
D
1033 1037Right-handed 310
Helix 33
33
D
1084 1090Right-handed alpha
Helix 34
34
D
1096 1105Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1S0W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
242 250anti-parallel
Strand 5
A
230 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1030 1031first strand
Strand 2
C
1040 1047anti-parallel
Strand 3
C
1050 1058anti-parallel
Strand 4
C
1067 1073anti-parallel
Strand 5
C
1109 1115anti-parallel
Strand 6
C
1126 1132anti-parallel
Strand 7
C
1146 1152anti-parallel
Strand 8
C
1155 1162anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
43 50anti-parallel
Strand 3
B
257 264anti-parallel
Strand 4
B
243 250anti-parallel
Strand 5
B
230 237anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1030 1031first strand
Strand 2
D
1040 1047anti-parallel
Strand 3
D
1050 1058anti-parallel
Strand 4
D
1067 1073anti-parallel
Strand 5
D
1109 1115anti-parallel
Strand 6
D
1126 1132anti-parallel
Strand 7
D
1146 1152anti-parallel
Strand 8
D
1155 1162anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il