Analysis of interatomic Contacts of Structural Units in PDB entry:
1S59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1S59 entry

There are 6 chains in PDB entry 1S59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 79	GLU 231
B	VAL 83	GLU 231
C	VAL 83	GLU 231
D	SER 79	GLU 231
E	VAL 83	GLU 231
F	SER 79	GLU 231

There are 64 helices in PDB entry 1S59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	91	97	Right-handed alpha
Helix 2	2	A	99	111	Right-handed alpha
Helix 3	3	A	123	131	Right-handed alpha
Helix 4	4	A	132	135	Right-handed 310
Helix 5	5	A	139	148	Right-handed alpha
Helix 6	6	A	161	171	Right-handed alpha
Helix 7	7	A	182	188	Right-handed alpha
Helix 8	8	A	190	194	Right-handed 310
Helix 9	9	A	201	213	Right-handed alpha
Helix 10	10	A	225	230	Right-handed alpha
Helix 11	11	B	91	97	Right-handed alpha
Helix 12	12	B	99	111	Right-handed alpha
Helix 13	13	B	123	131	Right-handed alpha
Helix 14	14	B	132	135	Right-handed 310
Helix 15	15	B	139	148	Right-handed alpha
Helix 16	16	B	161	171	Right-handed alpha
Helix 17	17	B	182	188	Right-handed alpha
Helix 18	18	B	190	194	Right-handed 310
Helix 19	19	B	201	213	Right-handed alpha
Helix 20	20	B	214	218	Right-handed 310
Helix 21	21	B	225	230	Right-handed alpha
Helix 22	22	C	91	97	Right-handed alpha
Helix 23	23	C	99	111	Right-handed alpha
Helix 24	24	C	123	131	Right-handed alpha
Helix 25	25	C	132	135	Right-handed 310
Helix 26	26	C	139	148	Right-handed alpha
Helix 27	27	C	161	171	Right-handed alpha
Helix 28	28	C	182	188	Right-handed alpha
Helix 29	29	C	190	194	Right-handed 310
Helix 30	30	C	201	213	Right-handed alpha
Helix 31	31	C	214	218	Right-handed 310
Helix 32	32	C	225	230	Right-handed alpha
Helix 33	33	D	91	97	Right-handed alpha
Helix 34	34	D	99	111	Right-handed alpha
Helix 35	35	D	123	131	Right-handed alpha
Helix 36	36	D	132	135	Right-handed 310
Helix 37	37	D	139	149	Right-handed alpha
Helix 38	38	D	161	171	Right-handed alpha
Helix 39	39	D	174	178	Right-handed 310
Helix 40	40	D	182	188	Right-handed alpha
Helix 41	41	D	190	194	Right-handed 310
Helix 42	42	D	201	213	Right-handed alpha
Helix 43	43	D	214	218	Right-handed 310
Helix 44	44	D	225	230	Right-handed alpha
Helix 45	45	E	91	97	Right-handed alpha
Helix 46	46	E	99	111	Right-handed alpha
Helix 47	47	E	123	131	Right-handed alpha
Helix 48	48	E	132	135	Right-handed 310
Helix 49	49	E	139	149	Right-handed alpha
Helix 50	50	E	161	171	Right-handed alpha
Helix 51	51	E	182	188	Right-handed alpha
Helix 52	52	E	190	194	Right-handed 310
Helix 53	53	E	201	213	Right-handed alpha
Helix 54	54	E	225	229	Right-handed 310
Helix 55	55	F	91	97	Right-handed alpha
Helix 56	56	F	99	111	Right-handed alpha
Helix 57	57	F	123	131	Right-handed alpha
Helix 58	58	F	132	135	Right-handed 310
Helix 59	59	F	139	149	Right-handed alpha
Helix 60	60	F	161	171	Right-handed alpha
Helix 61	61	F	182	188	Right-handed alpha
Helix 62	62	F	190	194	Right-handed 310
Helix 63	63	F	201	213	Right-handed alpha
Helix 64	64	F	225	230	Right-handed alpha

There are 6 sheets in PDB entry 1S59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	120	first strand
Strand 2	A	152	159	anti-parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	196	198	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	120	first strand
Strand 2	B	152	158	anti-parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	196	198	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	120	first strand
Strand 2	C	152	158	anti-parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	196	198	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	120	first strand
Strand 2	D	152	159	anti-parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	196	198	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	120	first strand
Strand 2	E	152	158	anti-parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	196	198	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	120	first strand
Strand 2	F	152	160	anti-parallel
Strand 3	F	83	90	anti-parallel
Strand 4	F	196	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1S59

Analysis of interatomic Contacts of Structural Units in PDB entry:
1S59