Analysis of interatomic Contacts of Structural Units in PDB entry:
1S5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1S5J entry

There is 1 chain in PDB entry 1S5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 40ILE 864
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1S5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 100Right-handed alpha
Helix 2
2
A
102 107Right-handed alpha
Helix 3
3
A
137 145Right-handed alpha
Helix 4
4
A
157 167Right-handed alpha
Helix 5
5
A
189 200Right-handed alpha
Helix 6
6
A
204 215Right-handed alpha
Helix 7
7
A
215 220Right-handed alpha
Helix 8
8
A
291 304Right-handed alpha
Helix 9
9
A
317 328Right-handed alpha
Helix 10
10
A
332 336Right-handed 310
Helix 11
11
A
356 361Right-handed alpha
Helix 12
12
A
362 369Right-handed alpha
Helix 13
13
A
378 388Right-handed alpha
Helix 14
14
A
402 420Right-handed alpha
Helix 15
15
A
422 440Right-handed alpha
Helix 16
16
A
442 447Right-handed alpha
Helix 17
17
A
450 467Right-handed alpha
Helix 18
18
A
472 479Right-handed alpha
Helix 19
19
A
517 526Right-handed alpha
Helix 20
20
A
561 577Right-handed alpha
Helix 21
21
A
577 583Right-handed alpha
Helix 22
22
A
588 615Right-handed alpha
Helix 23
23
A
622 646Right-handed alpha
Helix 24
24
A
665 680Right-handed alpha
Helix 25
25
A
729 740Right-handed alpha
Helix 26
26
A
748 763Right-handed alpha
Helix 27
27
A
842 848Right-handed alpha
Helix 28
28
A
852 858Right-handed alpha
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There are 6 sheets in PDB entry 1S5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 81first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
50 59anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
180 183anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 120first strand
Strand 2
A
127 135anti-parallel
Strand 3
A
89 92anti-parallel
Strand 4
A
151 152anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
284 289anti-parallel
Strand 3
A
264 269parallel
Strand 4
A
252 259anti-parallel
Strand 5
A
227 234anti-parallel
Strand 6
A
308 311parallel
Strand 7
A
352 355parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
347 348anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 655first strand
Strand 2
A
658 662anti-parallel
Strand 3
A
505 515anti-parallel
Strand 4
A
684 695anti-parallel
Strand 5
A
702 705anti-parallel
Strand 6
A
713 714anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 544first strand
Strand 2
A
553 554anti-parallel
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