Analysis of interatomic Contacts of Structural Units in PDB entry:
1S6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1S6Q entry

There are 2 chains in PDB entry 1S6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1VAL 552
B
 PRO 1TYR 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 1S6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 44Right-handed alpha
Helix 2
2
A
77 83Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
112 118Right-handed 310
Helix 5
5
A
121 129Right-handed 310
Helix 6
6
A
155 174Right-handed alpha
Helix 7
7
A
194 211Right-handed alpha
Helix 8
8
A
253 270Right-handed alpha
Helix 9
10
A
296 312Right-handed alpha
Helix 10
11
A
363 384Right-handed alpha
Helix 11
12
A
394 405Right-handed alpha
Helix 12
13
A
473 489Right-handed alpha
Helix 13
14
A
499 508Right-handed alpha
Helix 14
15
A
515 527Right-handed alpha
Helix 15
16
A
544 552Right-handed alpha
Helix 16
17
B
27 44Right-handed alpha
Helix 17
18
B
77 83Right-handed alpha
Helix 18
19
B
86 91Right-handed alpha
Helix 19
20
B
99 103Right-handed 310
Helix 20
21
B
112 118Right-handed 310
Helix 21
22
B
121 129Right-handed 310
Helix 22
23
B
134 138Right-handed 310
Helix 23
24
B
155 174Right-handed alpha
Helix 24
25
B
194 213Right-handed alpha
Helix 25
26
B
253 268Right-handed alpha
Helix 26
27
B
276 281Right-handed alpha
Helix 27
28
B
296 311Right-handed alpha
Helix 28
29
B
363 384Right-handed alpha
Helix 29
30
B
394 405Right-handed alpha
Helix 30
31
B
421 427Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1S6Q. Click on sheet of interest to get list of strands forming it: A, C, D, E, F, G, H, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
128 132anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 111first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
178 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
238 240anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 355first strand
Strand 2
A
336 342anti-parallel
Strand 3
A
325 332anti-parallel
Strand 4
A
413 419parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 459first strand
Strand 2
A
438 447anti-parallel
Strand 3
A
492 497parallel
Strand 4
A
530 536parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
129 132anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 191first strand
Strand 2
B
105 110first strand
Strand 3
B
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 355first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
326 331anti-parallel
Strand 4
B
413 417parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il