Analysis of interatomic Contacts of Structural Units in PDB entry:
1S6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1S6Y entry

There is 1 chain in PDB entry 1S6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4LYS 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1S6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
44 62Right-handed alpha
Helix 4
4
A
73 79Right-handed alpha
Helix 5
5
A
91 102Right-handed alpha
Helix 6
6
A
103 107Right-handed 310
Helix 7
7
A
115 140Right-handed alpha
Helix 8
8
A
151 163Right-handed alpha
Helix 9
9
A
173 187Right-handed alpha
Helix 10
10
A
189 191Right-handed 310
Helix 11
11
A
216 225Right-handed alpha
Helix 12
12
A
243 251Right-handed alpha
Helix 13
13
A
255 257Right-handed 310
Helix 14
14
A
258 263Right-handed alpha
Helix 15
15
A
263 277Right-handed alpha
Helix 16
16
A
280 294Right-handed alpha
Helix 17
17
A
318 333Right-handed alpha
Helix 18
18
A
377 401Right-handed alpha
Helix 19
19
A
402 413Right-handed alpha
Helix 20
20
A
418 433Right-handed alpha
Helix 21
21
A
434 437Right-handed 310
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There are 3 sheets in PDB entry 1S6Y. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
33 39parallel
Strand 3
A
5 10parallel
Strand 4
A
83 86parallel
Strand 5
A
144 147parallel
Strand 6
A
168 170parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
203 211anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
356 364anti-parallel
Strand 5
A
337 343anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
203 211anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
356 364anti-parallel
Strand 5
A
367 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il