Analysis of interatomic Contacts of Structural Units in PDB entry:
1S8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1S8F entry

There are 2 chains in PDB entry 1S8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1005ALA 1174
B
 GLY 3999LEU 4173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1S8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1019 1030Right-handed alpha
Helix 2
2
A
1066 1068Right-handed 310
Helix 3
3
A
1069 1074Right-handed alpha
Helix 4
4
A
1075 1077Right-handed 310
Helix 5
5
A
1091 1097Right-handed alpha
Helix 6
6
A
1097 1110Right-handed alpha
Helix 7
7
A
1134 1145Right-handed alpha
Helix 8
8
A
1160 1174Right-handed alpha
Helix 9
9
B
4019 4030Right-handed alpha
Helix 10
10
B
4069 4078Right-handed alpha
Helix 11
11
B
4091 4097Right-handed alpha
Helix 12
12
B
4097 4109Right-handed alpha
Helix 13
13
B
4113 4117Right-handed 310
Helix 14
14
B
4134 4145Right-handed alpha
Helix 15
15
B
4160 4173Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1S8F.

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1152first strand
Strand 2
A
1119 1124parallel
Strand 3
A
1082 1088parallel
Strand 4
A
1007 1013parallel
Strand 5
A
1054 1063parallel
Strand 6
A
1038 1051anti-parallel
Strand 7
B
4038 4051anti-parallel
Strand 8
B
4054 4064anti-parallel
Strand 9
B
4005 4013parallel
Strand 10
B
4082 4088parallel
Strand 11
B
4119 4124parallel
Strand 12
B
4150 4152parallel
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