Analysis of interatomic Contacts of Structural Units in PDB entry:
1SBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SBN entry

There are 2 chains in PDB entry 1SBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ALA 1GLN 275
I
 LYS 8GLY 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 1SBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
EH1
E
6 11Right-handed alpha
Helix 2
EH2
E
13 20Right-handed alpha
Helix 3
EH3
E
63 73Right-handed alpha
Helix 4
EH4
E
103 117Right-handed alpha
Helix 5
EH5
E
132 145Right-handed alpha
Helix 6
EH6
E
220 238Right-handed alpha
Helix 7
EH7
E
242 253Right-handed alpha
Helix 8
EH8
E
269 275Right-handed alpha
Helix 9
IH1
I
17 29Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1SBN. Click on sheet of interest to get list of strands forming it: ES1, ES2, ES3, IS1,

There are 7 strands in ES1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 51first strand
Strand 2
E
88 97parallel
Strand 3
E
26 32parallel
Strand 4
E
120 128parallel
Strand 5
E
147 153parallel
Strand 6
E
174 181parallel
Strand 7
E
196 203parallel
Back to list of sheets
Back to top of page

There are 2 strands in ES2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
205 210first strand
Strand 2
E
213 218anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in ES3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
253 256first strand
Strand 2
E
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in IS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
8 10first strand
Strand 2
I
61 70anti-parallel
Strand 3
I
50 57anti-parallel
Strand 4
I
32 39parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il