Analysis of interatomic Contacts of Structural Units in PDB entry:
1SCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SCC entry

There is 1 chain in PDB entry 1SCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1SCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
19 31Right-handed alpha
Helix 3
3
A
34 39Right-handed alpha
Helix 4
4
A
50 54Right-handed 310
Helix 5
5
A
56 62Right-handed alpha
Helix 6
6
A
63 65Right-handed 310
Helix 7
7
A
98 102Right-handed 310
Helix 8
8
A
105 112Right-handed alpha
Helix 9
9
A
115 120Right-handed alpha
Helix 10
10
A
124 138Right-handed alpha
Helix 11
11
A
139 144Right-handed alpha
Helix 12
12
A
144 161Right-handed alpha
Helix 13
13
A
170 182Right-handed alpha
Helix 14
14
A
184 188Right-handed 310
Helix 15
15
A
189 190Right-handed 310
Helix 16
16
A
191 202Right-handed alpha
Helix 17
17
A
202 210Right-handed alpha
Helix 18
18
A
214 225Right-handed alpha
Helix 19
19
A
231 253Right-handed alpha
Helix 20
20
A
258 264Right-handed alpha
Helix 21
21
A
273 290Right-handed alpha
Helix 22
22
A
291 305Right-handed alpha
Helix 23
23
A
306 323Right-handed alpha
Helix 24
24
A
338 349Right-handed alpha
Helix 25
25
A
381 386Right-handed 310
Helix 26
26
A
406 411Right-handed alpha
Helix 27
27
A
418 422Right-handed 310
Helix 28
28
A
423 424Right-handed 310
Helix 29
29
A
425 444Right-handed alpha
Helix 30
30
A
473 477Right-handed 310
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There are 4 sheets in PDB entry 1SCC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
469 471anti-parallel
Strand 3
A
448 449anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
270 271anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
376 379anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
368 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il