Analysis of interatomic Contacts of Structural Units in PDB entry:
1SCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SCE entry

There are 4 chains in PDB entry 1SCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6ASP 102
B
 VAL 6ASP 102
C
 SER 2GLY 112
D
 LYS 3MET 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1SCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1A
A
12 18Right-handed alpha
Helix 2
2A
A
45 49Right-handed alpha
Helix 3
2C
A
69 72Right-handed alpha
Helix 4
1B
B
12 18Right-handed alpha
Helix 5
2B
B
45 49Right-handed alpha
Helix 6
3B
B
69 72Right-handed alpha
Helix 7
1C
C
12 18Right-handed alpha
Helix 8
2C
C
45 49Right-handed alpha
Helix 9
3C
C
69 72Right-handed alpha
Helix 10
1D
D
12 18Right-handed alpha
Helix 11
2D
D
45 49Right-handed alpha
Helix 12
3D
D
69 72Right-handed alpha
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There are 4 sheets in PDB entry 1SCE. Click on sheet of interest to get list of strands forming it: A1, B1, C1, D1,

There are 4 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
80 87anti-parallel
Strand 4
C
94 99anti-parallel
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There are 4 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 32first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
80 87anti-parallel
Strand 4
D
94 99anti-parallel
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There are 4 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 32first strand
Strand 2
C
36 42anti-parallel
Strand 3
C
80 87anti-parallel
Strand 4
A
94 99anti-parallel
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There are 4 strands in D1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 32first strand
Strand 2
D
36 42anti-parallel
Strand 3
D
80 87anti-parallel
Strand 4
B
94 99anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il