Analysis of interatomic Contacts of Structural Units in PDB entry:
1SCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SCZ entry

There is 1 chain in PDB entry 1SCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 172VAL 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1SCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
181 196Right-handed alpha
Helix 2
2
A
209 228Right-handed alpha
Helix 3
3
A
233 248Right-handed alpha
Helix 4
4
A
285 289Right-handed 310
Helix 5
5
A
290 305Right-handed alpha
Helix 6
6
A
311 316Right-handed alpha
Helix 7
7
A
326 329Right-handed 310
Helix 8
8
A
379 396Right-handed alpha
Helix 9
9
A
398 403Right-handed alpha
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There are 3 sheets in PDB entry 1SCZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 208first strand
Strand 2
A
360 374anti-parallel
Strand 3
A
343 357anti-parallel
Strand 4
A
320 324parallel
Strand 5
A
268 270parallel
Strand 6
A
282 283anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
259 261anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
277 279anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il