Analysis of interatomic Contacts of Structural Units in PDB entry:
1SD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SD5 entry

There is 1 chain in PDB entry 1SD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13GLY 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1SD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 36Right-handed alpha
Helix 2
2
A
46 58Right-handed alpha
Helix 3
3
A
72 83Right-handed alpha
Helix 4
4
A
96 104Right-handed alpha
Helix 5
5
A
105 107Right-handed 310
Helix 6
6
A
117 142Right-handed alpha
Helix 7
7
A
144 167Right-handed alpha
Helix 8
8
A
169 185Right-handed alpha
Helix 9
9
A
187 200Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1SD5.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
15 19parallel
Strand 3
A
61 65parallel
Strand 4
A
88 93parallel
Strand 5
A
110 114parallel
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