Analysis of interatomic Contacts of Structural Units in PDB entry:
1SDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SDJ entry

There is 1 chain in PDB entry 1SDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -10SER 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1SDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-10 -2Right-handed alpha
Helix 2
2
A
31 43Right-handed alpha
Helix 3
3
A
72 88Right-handed alpha
Helix 4
4
A
130 141Right-handed alpha
Helix 5
5
A
144 148Right-handed 310
Helix 6
6
A
180 192Right-handed alpha
Helix 7
7
A
225 239Right-handed alpha
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There are 3 sheets in PDB entry 1SDJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
92 98parallel
Strand 4
A
101 110anti-parallel
Strand 5
A
113 121anti-parallel
Strand 6
A
275 283anti-parallel
Strand 7
A
263 272anti-parallel
Strand 8
A
248 255anti-parallel
Strand 9
A
207 210parallel
Strand 10
A
196 201anti-parallel
Strand 11
A
163 167parallel
Strand 12
A
155 158anti-parallel
Strand 13
A
124 125anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
19 25parallel
Strand 5
A
4 10anti-parallel
Strand 6
A
285 292anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
221 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il