Analysis of interatomic Contacts of Structural Units in PDB entry:
1SE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SE5 entry

There is 1 chain in PDB entry 1SE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 71LEU 808
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1SE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 103Right-handed alpha
Helix 2
2
A
126 131Right-handed 310
Helix 3
3
A
137 142Right-handed 310
Helix 4
4
A
156 160Right-handed 310
Helix 5
5
A
173 188Right-handed alpha
Helix 6
6
A
197 203Right-handed alpha
Helix 7
7
A
208 215Right-handed 310
Helix 8
8
A
224 232Right-handed alpha
Helix 9
9
A
249 265Right-handed alpha
Helix 10
10
A
267 271Right-handed 310
Helix 11
11
A
278 285Right-handed alpha
Helix 12
12
A
292 311Right-handed alpha
Helix 13
13
A
321 328Right-handed alpha
Helix 14
14
A
330 352Right-handed alpha
Helix 15
15
A
355 360Right-handed alpha
Helix 16
16
A
372 393Right-handed alpha
Helix 17
17
A
398 403Right-handed 310
Helix 18
18
A
421 437Right-handed alpha
Helix 19
19
A
455 472Right-handed alpha
Helix 20
20
A
485 509Right-handed alpha
Helix 21
21
A
511 519Right-handed alpha
Helix 22
22
A
519 538Right-handed alpha
Helix 23
23
A
563 582Right-handed alpha
Helix 24
24
A
583 600Right-handed alpha
Helix 25
25
A
612 623Right-handed alpha
Helix 26
26
A
626 639Right-handed alpha
Helix 27
27
A
651 656Right-handed alpha
Helix 28
28
A
659 677Right-handed alpha
Helix 29
29
A
693 707Right-handed alpha
Helix 30
30
A
718 730Right-handed alpha
Helix 31
31
A
742 757Right-handed alpha
Helix 32
32
A
771 773Right-handed 310
Helix 33
33
A
774 782Right-handed alpha
Helix 34
34
A
792 808Right-handed alpha
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There are 3 sheets in PDB entry 1SE5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
120 121anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
272 275parallel
Strand 3
A
241 244parallel
Strand 4
A
191 194parallel
Strand 5
A
164 169parallel
Strand 6
A
441 443parallel
Strand 7
A
406 410parallel
Strand 8
A
363 369parallel
Strand 9
A
317 320parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 712first strand
Strand 2
A
681 685parallel
Strand 3
A
733 738parallel
Strand 4
A
763 768parallel
Strand 5
A
783 787parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il