Analysis of interatomic Contacts of Structural Units in PDB entry:
1SE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SE8 entry

There is 1 chain in PDB entry 1SE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3ARG 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 1SE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 69Right-handed alpha
Helix 2
2
A
184 191Right-handed alpha
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There are 2 sheets in PDB entry 1SE8. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
123 126anti-parallel
Strand 3
A
28 38parallel
Strand 4
A
50 59anti-parallel
Strand 5
A
96 108parallel
Strand 6
A
76 88anti-parallel
Strand 7
A
5 14anti-parallel
Strand 8
A
129 138anti-parallel
Strand 9
A
152 165anti-parallel
Strand 10
A
143 146anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
5 14anti-parallel
Strand 4
A
129 138anti-parallel
Strand 5
A
198 209anti-parallel
Strand 6
A
219 230anti-parallel
Strand 7
A
171 183parallel
Strand 8
A
152 165anti-parallel
Strand 9
A
143 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il