Analysis of interatomic Contacts of Structural Units in PDB entry:
1SEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SEB entry

There are 8 chains in PDB entry 1SEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1ASP 181
B
 GLY 1SER 192
C
 UNK 1UNK 13
D
 SER 2THR 235
E
 ILE 1ASP 181
F
 GLY 1SER 192
G
 UNK 1UNK 13
H
 SER 2THR 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1SEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 50Right-handed 310
Helix 2
2
A
56 76Right-handed alpha
Helix 3
3
B
55 63Right-handed alpha
Helix 4
4
B
65 72Right-handed alpha
Helix 5
5
B
74 77Right-handed alpha
Helix 6
6
B
79 86Right-handed alpha
Helix 7
7
D
14 16Right-handed 310
Helix 8
8
D
21 28Right-handed 310
Helix 9
9
D
71 78Right-handed alpha
Helix 10
10
D
157 172Right-handed alpha
Helix 11
11
D
210 217Right-handed alpha
Helix 12
12
E
46 50Right-handed 310
Helix 13
13
E
56 76Right-handed alpha
Helix 14
14
F
55 63Right-handed alpha
Helix 15
15
F
65 72Right-handed alpha
Helix 16
16
F
74 77Right-handed alpha
Helix 17
17
F
79 86Right-handed alpha
Helix 18
18
H
14 16Right-handed 310
Helix 19
19
H
21 28Right-handed 310
Helix 20
20
H
71 78Right-handed alpha
Helix 21
21
H
157 172Right-handed alpha
Helix 22
22
H
210 217Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 1SEB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 15anti-parallel
Strand 5
B
7 18anti-parallel
Strand 6
B
23 31anti-parallel
Strand 7
B
36 41anti-parallel
Strand 8
B
47 49anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
102 110anti-parallel
Strand 3
A
147 154anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
112 122anti-parallel
Strand 3
B
155 164anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 133first strand
Strand 2
B
170 177anti-parallel
Strand 3
B
184 189anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 35first strand
Strand 2
D
83 86anti-parallel
Strand 3
D
117 119anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
64 67anti-parallel
Strand 3
D
112 114parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
229 235first strand
Strand 2
D
184 190anti-parallel
Strand 3
D
195 199anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 43first strand
Strand 2
E
29 35anti-parallel
Strand 3
E
19 26anti-parallel
Strand 4
E
5 15anti-parallel
Strand 5
F
7 18anti-parallel
Strand 6
F
23 31anti-parallel
Strand 7
F
36 41anti-parallel
Strand 8
F
47 49anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 93first strand
Strand 2
E
102 110anti-parallel
Strand 3
E
147 154anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
126 128first strand
Strand 2
E
118 123anti-parallel
Strand 3
E
161 166anti-parallel
Strand 4
E
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
98 103first strand
Strand 2
F
112 122anti-parallel
Strand 3
F
155 164anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
127 133first strand
Strand 2
F
170 177anti-parallel
Strand 3
F
184 189anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 35first strand
Strand 2
H
83 86anti-parallel
Strand 3
H
117 119anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
48 51first strand
Strand 2
H
64 67anti-parallel
Strand 3
H
112 114parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
229 235first strand
Strand 2
H
184 190anti-parallel
Strand 3
H
195 199anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il