Analysis of interatomic Contacts of Structural Units in PDB entry:
1SJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SJ2 entry

There are 2 chains in PDB entry 1SJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 24ARG 740
B
GLY 24ARG 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 1SJ2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
34 38Right-handed 310
Helix 3
3
A
44 50Right-handed 310
Helix 4
4
A
52 56Right-handed 310
Helix 5
5
A
63 69Right-handed alpha
Helix 6
6
A
72 85Right-handed alpha
Helix 7
7
A
93 97Right-handed 310
Helix 8
8
A
98 112Right-handed alpha
Helix 9
9
A
125 129Right-handed 310
Helix 10
10
A
131 139Right-handed 310
Helix 11
11
A
140 148Right-handed alpha
Helix 12
12
A
148 156Right-handed alpha
Helix 13
13
A
157 159Right-handed 310
Helix 14
14
A
160 176Right-handed alpha
Helix 15
15
A
234 238Right-handed 310
Helix 16
16
A
240 254Right-handed alpha
Helix 17
17
A
258 270Right-handed alpha
Helix 18
18
A
287 291Right-handed 310
Helix 19
19
A
292 296Right-handed 310
Helix 20
20
A
308 312Right-handed 310
Helix 21
21
A
330 339Right-handed alpha
Helix 22
22
A
357 359Right-handed 310
Helix 23
23
A
378 387Right-handed alpha
Helix 24
24
A
387 400Right-handed alpha
Helix 25
25
A
400 418Right-handed alpha
Helix 26
26
A
419 421Right-handed 310
Helix 27
27
A
422 426Right-handed 310
Helix 28
28
A
436 440Right-handed 310
Helix 29
29
A
451 464Right-handed alpha
Helix 30
30
A
468 481Right-handed alpha
Helix 31
31
A
495 499Right-handed 310
Helix 32
32
A
501 505Right-handed 310
Helix 33
33
A
509 512Right-handed 310
Helix 34
34
A
513 532Right-handed alpha
Helix 35
35
A
539 559Right-handed alpha
Helix 36
36
A
575 579Right-handed 310
Helix 37
37
A
580 585Right-handed alpha
Helix 38
38
A
586 588Right-handed 310
Helix 39
39
A
593 596Right-handed 310
Helix 40
40
A
605 617Right-handed alpha
Helix 41
41
A
620 634Right-handed alpha
Helix 42
42
A
637 641Right-handed 310
Helix 43
43
A
655 662Right-handed alpha
Helix 44
44
A
692 701Right-handed alpha
Helix 45
45
A
701 712Right-handed alpha
Helix 46
46
A
716 733Right-handed alpha
Helix 47
47
A
736 740Right-handed 310
Helix 48
48
B
34 38Right-handed 310
Helix 49
49
B
44 49Right-handed 310
Helix 50
50
B
52 56Right-handed 310
Helix 51
51
B
63 69Right-handed alpha
Helix 52
52
B
72 85Right-handed alpha
Helix 53
53
B
93 97Right-handed 310
Helix 54
54
B
98 111Right-handed alpha
Helix 55
55
B
125 129Right-handed 310
Helix 56
56
B
131 139Right-handed 310
Helix 57
57
B
140 148Right-handed alpha
Helix 58
58
B
148 156Right-handed alpha
Helix 59
59
B
157 159Right-handed 310
Helix 60
60
B
160 176Right-handed alpha
Helix 61
61
B
234 238Right-handed 310
Helix 62
62
B
240 254Right-handed alpha
Helix 63
63
B
258 270Right-handed alpha
Helix 64
64
B
280 284Right-handed 310
Helix 65
65
B
287 291Right-handed 310
Helix 66
66
B
292 296Right-handed 310
Helix 67
67
B
308 312Right-handed 310
Helix 68
68
B
330 339Right-handed alpha
Helix 69
69
B
357 359Right-handed 310
Helix 70
70
B
378 387Right-handed alpha
Helix 71
71
B
387 400Right-handed alpha
Helix 72
72
B
400 418Right-handed alpha
Helix 73
73
B
422 426Right-handed 310
Helix 74
74
B
436 440Right-handed 310
Helix 75
75
B
451 466Right-handed alpha
Helix 76
76
B
468 481Right-handed alpha
Helix 77
77
B
495 498Right-handed 310
Helix 78
78
B
499 505Right-handed alpha
Helix 79
79
B
506 509Right-handed 310
Helix 80
80
B
512 531Right-handed alpha
Helix 81
81
B
539 558Right-handed alpha
Helix 82
82
B
575 579Right-handed 310
Helix 83
83
B
593 596Right-handed 310
Helix 84
84
B
605 617Right-handed alpha
Helix 85
85
B
620 634Right-handed alpha
Helix 86
86
B
637 641Right-handed 310
Helix 87
87
B
655 662Right-handed alpha
Helix 88
88
B
693 701Right-handed alpha
Helix 89
89
B
701 712Right-handed alpha
Helix 90
90
B
716 734Right-handed alpha
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There are 8 sheets in PDB entry 1SJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
210 211first strand
Strand 2
A
215 216anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
341 345first strand
Strand 2
A
351 355anti-parallel
Strand 3
A
376 377anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
591 592first strand
Strand 2
A
597 598anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
667 670first strand
Strand 2
A
678 681anti-parallel
Strand 3
A
687 691anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
210 211first strand
Strand 2
B
215 216anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
341 345first strand
Strand 2
B
351 355anti-parallel
Strand 3
B
376 377anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
591 592first strand
Strand 2
B
597 598anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
667 670first strand
Strand 2
B
677 681anti-parallel
Strand 3
B
687 692anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il