Analysis of interatomic Contacts of Structural Units in PDB entry:
1SJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SJC entry

There are 4 chains in PDB entry 1SJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 367
B
 MET 1SER 368
C
 MET 1GLY 367
D
 MET 1SER 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 1SJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 70Right-handed alpha
Helix 2
2
A
70 77Right-handed alpha
Helix 3
3
A
82 91Right-handed alpha
Helix 4
4
A
96 115Right-handed alpha
Helix 5
5
A
118 124Right-handed alpha
Helix 6
6
A
141 156Right-handed alpha
Helix 7
7
A
169 181Right-handed alpha
Helix 8
8
A
195 197Right-handed 310
Helix 9
9
A
198 204Right-handed alpha
Helix 10
10
A
205 209Right-handed 310
Helix 11
11
A
221 230Right-handed alpha
Helix 12
12
A
244 254Right-handed alpha
Helix 13
13
A
269 283Right-handed alpha
Helix 14
14
A
295 306Right-handed alpha
Helix 15
15
A
319 323Right-handed 310
Helix 16
16
A
352 359Right-handed alpha
Helix 17
17
B
59 70Right-handed alpha
Helix 18
18
B
70 77Right-handed alpha
Helix 19
19
B
82 91Right-handed alpha
Helix 20
20
B
96 115Right-handed alpha
Helix 21
21
B
118 124Right-handed alpha
Helix 22
22
B
141 156Right-handed alpha
Helix 23
23
B
169 181Right-handed alpha
Helix 24
24
B
195 197Right-handed 310
Helix 25
25
B
198 204Right-handed alpha
Helix 26
26
B
205 209Right-handed 310
Helix 27
27
B
221 232Right-handed alpha
Helix 28
28
B
244 255Right-handed alpha
Helix 29
29
B
269 283Right-handed alpha
Helix 30
30
B
295 306Right-handed alpha
Helix 31
31
B
319 323Right-handed 310
Helix 32
32
B
352 359Right-handed alpha
Helix 33
33
C
59 70Right-handed alpha
Helix 34
34
C
70 77Right-handed alpha
Helix 35
35
C
82 91Right-handed alpha
Helix 36
36
C
96 115Right-handed alpha
Helix 37
37
C
118 124Right-handed alpha
Helix 38
38
C
141 156Right-handed alpha
Helix 39
39
C
169 181Right-handed alpha
Helix 40
40
C
195 197Right-handed 310
Helix 41
41
C
198 204Right-handed alpha
Helix 42
42
C
205 209Right-handed 310
Helix 43
43
C
221 232Right-handed alpha
Helix 44
44
C
244 254Right-handed alpha
Helix 45
45
C
269 283Right-handed alpha
Helix 46
46
C
295 306Right-handed alpha
Helix 47
47
C
319 323Right-handed 310
Helix 48
48
C
352 359Right-handed alpha
Helix 49
49
D
59 70Right-handed alpha
Helix 50
50
D
70 77Right-handed alpha
Helix 51
51
D
82 91Right-handed alpha
Helix 52
52
D
96 115Right-handed alpha
Helix 53
53
D
118 124Right-handed alpha
Helix 54
54
D
141 156Right-handed alpha
Helix 55
55
D
169 181Right-handed alpha
Helix 56
56
D
195 197Right-handed 310
Helix 57
57
D
198 204Right-handed alpha
Helix 58
58
D
205 209Right-handed 310
Helix 59
59
D
221 232Right-handed alpha
Helix 60
60
D
244 254Right-handed alpha
Helix 61
61
D
269 283Right-handed alpha
Helix 62
62
D
295 306Right-handed alpha
Helix 63
63
D
319 323Right-handed 310
Helix 64
64
D
352 359Right-handed alpha
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There are 12 sheets in PDB entry 1SJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
28 37anti-parallel
Strand 3
A
5 14anti-parallel
Strand 4
A
360 366anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
338 340anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
159 163parallel
Strand 3
A
186 189parallel
Strand 4
A
213 214parallel
Strand 5
A
236 238parallel
Strand 6
A
259 262parallel
Strand 7
A
287 289parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 47first strand
Strand 2
B
24 38anti-parallel
Strand 3
B
5 21anti-parallel
Strand 4
B
360 367anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
338 340anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
159 163parallel
Strand 3
B
186 189parallel
Strand 4
B
213 214parallel
Strand 5
B
236 238parallel
Strand 6
B
259 262parallel
Strand 7
B
287 289parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 46first strand
Strand 2
C
24 37anti-parallel
Strand 3
C
5 21anti-parallel
Strand 4
C
360 366anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
338 340anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 136first strand
Strand 2
C
160 163parallel
Strand 3
C
186 189parallel
Strand 4
C
213 214parallel
Strand 5
C
236 238parallel
Strand 6
C
259 262parallel
Strand 7
C
287 289parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 47first strand
Strand 2
D
25 37anti-parallel
Strand 3
D
5 20anti-parallel
Strand 4
D
360 367anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 131first strand
Strand 2
D
338 340anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 136first strand
Strand 2
D
159 163parallel
Strand 3
D
185 189parallel
Strand 4
D
213 214parallel
Strand 5
D
236 238parallel
Strand 6
D
259 262parallel
Strand 7
D
287 289parallel
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