Analysis of interatomic Contacts of Structural Units in PDB entry:
1SJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SJI entry

There are 2 chains in PDB entry 1SJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ASN 352
B
 GLY 3ASN 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1SJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 28Right-handed alpha
Helix 2
2
A
48 65Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
80 88Right-handed alpha
Helix 5
5
A
111 121Right-handed alpha
Helix 6
6
A
132 142Right-handed alpha
Helix 7
7
A
157 170Right-handed alpha
Helix 8
8
A
181 189Right-handed alpha
Helix 9
9
A
214 226Right-handed alpha
Helix 10
10
A
237 244Right-handed alpha
Helix 11
11
A
259 276Right-handed alpha
Helix 12
12
A
277 279Right-handed 310
Helix 13
13
A
288 291Right-handed 310
Helix 14
14
A
292 303Right-handed alpha
Helix 15
15
A
335 348Right-handed alpha
Helix 16
16
B
22 28Right-handed alpha
Helix 17
17
B
44 65Right-handed alpha
Helix 18
18
B
81 86Right-handed alpha
Helix 19
19
B
111 123Right-handed alpha
Helix 20
20
B
132 142Right-handed alpha
Helix 21
21
B
157 169Right-handed alpha
Helix 22
22
B
181 188Right-handed alpha
Helix 23
23
B
214 225Right-handed alpha
Helix 24
24
B
237 244Right-handed alpha
Helix 25
25
B
259 276Right-handed alpha
Helix 26
26
B
288 291Right-handed 310
Helix 27
27
B
292 304Right-handed alpha
Helix 28
28
B
335 345Right-handed alpha
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There are 6 sheets in PDB entry 1SJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
70 76parallel
Strand 3
A
32 38parallel
Strand 4
A
94 99anti-parallel
Strand 5
A
102 106anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
175 179parallel
Strand 3
A
147 151parallel
Strand 4
A
195 198anti-parallel
Strand 5
A
206 207anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
284 287parallel
Strand 3
A
249 254parallel
Strand 4
A
311 316anti-parallel
Strand 5
A
322 324anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
70 76parallel
Strand 3
B
32 38parallel
Strand 4
B
95 98anti-parallel
Strand 5
B
103 104anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
175 179parallel
Strand 3
B
147 151parallel
Strand 4
B
195 198anti-parallel
Strand 5
B
206 207anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
284 287parallel
Strand 3
B
249 254parallel
Strand 4
B
311 316anti-parallel
Strand 5
B
322 325anti-parallel
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