Analysis of interatomic Contacts of Structural Units in PDB entry:
1SJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SJJ entry

There are 2 chains in PDB entry 1SJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 26LEU 888
B
 LEU 26LEU 888
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 1SJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 50Right-handed alpha
Helix 2
2
A
63 73Right-handed alpha
Helix 3
3
A
86 104Right-handed alpha
Helix 4
4
A
113 118Right-handed alpha
Helix 5
5
A
120 133Right-handed alpha
Helix 6
6
A
151 160Right-handed alpha
Helix 7
7
A
171 175Right-handed 310
Helix 8
8
A
177 186Right-handed alpha
Helix 9
9
A
194 199Right-handed 310
Helix 10
10
A
202 206Right-handed 310
Helix 11
11
A
207 218Right-handed alpha
Helix 12
12
A
224 229Right-handed alpha
Helix 13
13
A
235 246Right-handed alpha
Helix 14
14
A
269 295Right-handed alpha
Helix 15
15
A
296 298Right-handed 310
Helix 16
16
A
306 323Right-handed alpha
Helix 17
17
A
325 338Right-handed alpha
Helix 18
18
A
340 346Right-handed alpha
Helix 19
19
A
361 363Right-handed 310
Helix 20
20
A
364 377Right-handed alpha
Helix 21
21
A
379 387Right-handed alpha
Helix 22
22
A
390 420Right-handed alpha
Helix 23
23
A
427 446Right-handed alpha
Helix 24
24
A
447 465Right-handed alpha
Helix 25
25
A
469 519Right-handed alpha
Helix 26
26
A
522 535Right-handed alpha
Helix 27
27
A
542 544Right-handed 310
Helix 28
28
A
545 557Right-handed alpha
Helix 29
29
A
558 582Right-handed alpha
Helix 30
30
A
597 620Right-handed alpha
Helix 31
31
A
622 654Right-handed alpha
Helix 32
32
A
665 681Right-handed alpha
Helix 33
33
A
682 684Right-handed 310
Helix 34
34
A
685 698Right-handed alpha
Helix 35
35
A
711 739Right-handed alpha
Helix 36
36
A
745 757Right-handed alpha
Helix 37
37
A
771 780Right-handed alpha
Helix 38
38
A
785 796Right-handed alpha
Helix 39
39
A
806 811Right-handed alpha
Helix 40
40
A
811 816Right-handed alpha
Helix 41
41
A
822 831Right-handed alpha
Helix 42
42
A
832 834Right-handed 310
Helix 43
43
A
841 848Right-handed alpha
Helix 44
44
A
849 860Right-handed alpha
Helix 45
45
A
875 883Right-handed alpha
Helix 46
46
B
35 50Right-handed alpha
Helix 47
47
B
63 72Right-handed alpha
Helix 48
48
B
86 103Right-handed alpha
Helix 49
49
B
113 118Right-handed alpha
Helix 50
50
B
120 134Right-handed alpha
Helix 51
51
B
137 142Right-handed alpha
Helix 52
52
B
147 160Right-handed alpha
Helix 53
53
B
171 175Right-handed 310
Helix 54
54
B
177 188Right-handed alpha
Helix 55
55
B
189 192Right-handed 310
Helix 56
56
B
193 198Right-handed alpha
Helix 57
57
B
202 206Right-handed 310
Helix 58
58
B
207 216Right-handed alpha
Helix 59
59
B
224 229Right-handed alpha
Helix 60
60
B
235 244Right-handed alpha
Helix 61
61
B
245 248Right-handed 310
Helix 62
62
B
271 300Right-handed alpha
Helix 63
63
B
306 324Right-handed alpha
Helix 64
64
B
324 346Right-handed alpha
Helix 65
65
B
364 376Right-handed alpha
Helix 66
66
B
378 410Right-handed alpha
Helix 67
67
B
413 419Right-handed alpha
Helix 68
68
B
427 446Right-handed alpha
Helix 69
69
B
447 464Right-handed alpha
Helix 70
70
B
469 519Right-handed alpha
Helix 71
71
B
523 533Right-handed alpha
Helix 72
72
B
541 558Right-handed alpha
Helix 73
73
B
558 582Right-handed alpha
Helix 74
74
B
597 624Right-handed alpha
Helix 75
75
B
625 654Right-handed alpha
Helix 76
76
B
665 683Right-handed alpha
Helix 77
77
B
683 698Right-handed alpha
Helix 78
78
B
710 729Right-handed alpha
Helix 79
79
B
731 736Right-handed alpha
Helix 80
80
B
746 760Right-handed alpha
Helix 81
81
B
769 780Right-handed alpha
Helix 82
82
B
787 792Right-handed alpha
Helix 83
83
B
793 795Right-handed 310
Helix 84
84
B
804 817Right-handed alpha
Helix 85
85
B
822 834Right-handed alpha
Helix 86
86
B
841 848Right-handed alpha
Helix 87
87
B
852 858Right-handed alpha
Helix 88
88
B
875 880Right-handed alpha
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There are 4 sheets in PDB entry 1SJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 768first strand
Strand 2
A
802 804anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
838 840first strand
Strand 2
A
872 874anti-parallel
Strand 3
A
861 862anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
767 768first strand
Strand 2
B
802 803anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
838 840first strand
Strand 2
B
872 874anti-parallel
Strand 3
B
861 862anti-parallel
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