Analysis of interatomic Contacts of Structural Units in PDB entry:
1SJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SJP entry

There are 2 chains in PDB entry 1SJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 60GLU 514
B
 ASP 62GLU 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1SJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 79Right-handed alpha
Helix 2
2
A
88 107Right-handed alpha
Helix 3
3
A
110 132Right-handed alpha
Helix 4
4
A
138 150Right-handed alpha
Helix 5
5
A
152 166Right-handed alpha
Helix 6
6
A
198 202Right-handed 310
Helix 7
7
A
230 239Right-handed alpha
Helix 8
8
A
252 265Right-handed alpha
Helix 9
9
A
278 294Right-handed alpha
Helix 10
10
A
335 353Right-handed alpha
Helix 11
11
A
355 372Right-handed alpha
Helix 12
12
A
382 407Right-handed alpha
Helix 13
13
A
419 426Right-handed 310
Helix 14
14
A
430 443Right-handed alpha
Helix 15
15
A
444 453Right-handed alpha
Helix 16
16
A
457 467Right-handed alpha
Helix 17
17
A
493 511Right-handed alpha
Helix 18
18
B
62 77Right-handed alpha
Helix 19
19
B
88 106Right-handed alpha
Helix 20
20
B
110 132Right-handed alpha
Helix 21
21
B
138 151Right-handed alpha
Helix 22
22
B
152 166Right-handed alpha
Helix 23
23
B
198 202Right-handed 310
Helix 24
24
B
204 208Right-handed 310
Helix 25
25
B
230 241Right-handed alpha
Helix 26
26
B
252 265Right-handed alpha
Helix 27
27
B
278 294Right-handed alpha
Helix 28
28
B
310 314Right-handed 310
Helix 29
29
B
335 353Right-handed alpha
Helix 30
30
B
355 372Right-handed alpha
Helix 31
31
B
382 407Right-handed alpha
Helix 32
32
B
413 418Right-handed alpha
Helix 33
33
B
419 423Right-handed 310
Helix 34
34
B
429 443Right-handed alpha
Helix 35
35
B
444 455Right-handed alpha
Helix 36
36
B
457 468Right-handed alpha
Helix 37
37
B
493 513Right-handed alpha
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There are 10 sheets in PDB entry 1SJP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
373 379parallel
Strand 3
A
182 187anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
327 332anti-parallel
Strand 3
A
315 322anti-parallel
Strand 4
A
216 220anti-parallel
Strand 5
A
244 248parallel
Strand 6
A
271 274parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
315 322anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
297 298parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
490 492anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
482 483anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 176first strand
Strand 2
B
373 378parallel
Strand 3
B
183 187anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
327 332anti-parallel
Strand 3
B
315 322anti-parallel
Strand 4
B
210 213anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
327 332anti-parallel
Strand 3
B
315 322anti-parallel
Strand 4
B
216 224anti-parallel
Strand 5
B
244 251parallel
Strand 6
B
270 274parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 410first strand
Strand 2
B
490 492anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 474first strand
Strand 2
B
481 483anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il