Analysis of interatomic Contacts of Structural Units in PDB entry:
1SKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SKB entry

There is 1 chain in PDB entry 1SKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 8PHE 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1SKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 23Right-handed alpha
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
65 83Right-handed alpha
Helix 4
4
A
87 95Right-handed 310
Helix 5
5
A
106 124Right-handed alpha
Helix 6
6
A
124 129Right-handed alpha
Helix 7
7
A
140 160Right-handed alpha
Helix 8
8
A
192 197Right-handed alpha
Helix 9
9
A
199 224Right-handed alpha
Helix 10
10
A
230 249Right-handed alpha
Helix 11
11
A
258 262Right-handed 310
Helix 12
12
A
263 282Right-handed alpha
Helix 13
13
A
289 292Right-handed 310
Helix 14
14
A
293 306Right-handed alpha
Helix 15
15
A
316 321Right-handed alpha
Helix 16
16
A
338 349Right-handed alpha
Helix 17
17
A
373 378Right-handed alpha
Helix 18
18
A
423 430Right-handed alpha
Helix 19
19
A
430 435Right-handed alpha
Helix 20
20
A
438 443Right-handed 310
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There are 3 sheets in PDB entry 1SKB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
14 15anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
134 138parallel
Strand 3
A
332 337parallel
Strand 4
A
48 58parallel
Strand 5
A
383 391anti-parallel
Strand 6
A
398 403anti-parallel
Strand 7
A
406 407anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
134 138parallel
Strand 3
A
332 337parallel
Strand 4
A
48 58parallel
Strand 5
A
383 391anti-parallel
Strand 6
A
398 403anti-parallel
Strand 7
A
421 422anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il