Analysis of interatomic Contacts of Structural Units in PDB entry:
1SMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SMD entry

There is 1 chain in PDB entry 1SMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 2LEU 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1SMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 30Right-handed alpha
Helix 2
2
A
59 62Right-handed 310
Helix 3
3
A
76 88Right-handed alpha
Helix 4
4
A
133 135Right-handed 310
Helix 5
5
A
137 139Right-handed 310
Helix 6
6
A
154 159Right-handed alpha
Helix 7
7
A
162 164Right-handed 310
Helix 8
8
A
174 189Right-handed alpha
Helix 9
9
A
199 201Right-handed 310
Helix 10
10
A
204 212Right-handed alpha
Helix 11
11
A
244 247Right-handed 310
Helix 12
12
A
257 266Right-handed alpha
Helix 13
13
A
274 278Right-handed 310
Helix 14
14
A
281 284Right-handed 310
Helix 15
15
A
289 291Right-handed 310
Helix 16
16
A
301 303Right-handed 310
Helix 17
17
A
309 311Right-handed 310
Helix 18
18
A
318 330Right-handed 310
Helix 19
19
A
385 387Right-handed 310
Helix 20
20
A
389 401Right-handed alpha
Helix 21
21
A
492 494Right-handed 310
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There are 5 sheets in PDB entry 1SMD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 340first strand
Strand 2
A
12 16parallel
Strand 3
A
39 42parallel
Strand 4
A
92 97parallel
Strand 5
A
193 196parallel
Strand 6
A
229 232parallel
Strand 7
A
252 254parallel
Strand 8
A
292 294parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
165 167anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 411first strand
Strand 2
A
416 421anti-parallel
Strand 3
A
425 430anti-parallel
Strand 4
A
487 491anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 441first strand
Strand 2
A
474 479anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 450first strand
Strand 2
A
466 469anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il