Analysis of interatomic Contacts of Structural Units in PDB entry:
1SMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SMV entry

There are 3 chains in PDB entry 1SMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 65LEU 260
B
 GLY 65LEU 260
C
 GLN 39LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1SMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 96Right-handed alpha
Helix 2
2
A
98 106Right-handed alpha
Helix 3
3
A
147 152Right-handed alpha
Helix 4
4
A
165 171Right-handed 310
Helix 5
5
A
179 181Right-handed 310
Helix 6
6
A
202 211Right-handed alpha
Helix 7
7
A
213 216Right-handed 310
Helix 8
8
A
256 258Right-handed 310
Helix 9
9
B
93 96Right-handed alpha
Helix 10
10
B
98 106Right-handed alpha
Helix 11
11
B
147 152Right-handed alpha
Helix 12
12
B
165 171Right-handed 310
Helix 13
13
B
189 191Right-handed 310
Helix 14
14
B
202 211Right-handed alpha
Helix 15
15
B
213 217Right-handed 310
Helix 16
16
B
256 258Right-handed 310
Helix 17
17
C
93 96Right-handed alpha
Helix 18
18
C
98 106Right-handed alpha
Helix 19
19
C
147 152Right-handed alpha
Helix 20
20
C
165 172Right-handed 310
Helix 21
21
C
189 191Right-handed 310
Helix 22
22
C
202 211Right-handed alpha
Helix 23
23
C
213 216Right-handed 310
Helix 24
24
C
256 258Right-handed 310
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There are 6 sheets in PDB entry 1SMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
223 229anti-parallel
Strand 3
A
130 136anti-parallel
Strand 4
A
157 160anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
109 121anti-parallel
Strand 3
A
240 251anti-parallel
Strand 4
A
67 78anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 90first strand
Strand 2
B
223 229anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
157 160anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 186first strand
Strand 2
B
109 121anti-parallel
Strand 3
B
240 251anti-parallel
Strand 4
B
67 78anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
67 78anti-parallel
Strand 3
C
240 251anti-parallel
Strand 4
C
109 121anti-parallel
Strand 5
C
183 186anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 90first strand
Strand 2
C
223 229anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
157 160anti-parallel
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