Analysis of interatomic Contacts of Structural Units in PDB entry:
1SVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SVC entry

There are 2 chains in PDB entry 1SVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 A 1 A 19
P
 PRO 43GLU 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 1SVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
P
61 63Right-handed 310
Helix 2
2
P
147 164Right-handed 310
Helix 3
3
P
168 171Right-handed alpha
Helix 4
4
P
174 179Right-handed 310
Helix 5
5
P
191 205Right-handed alpha
Helix 6
6
P
246 248Right-handed 310
Helix 7
7
P
278 280Right-handed 310
Helix 8
8
P
303 305Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1SVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
134 136first strand
Strand 2
P
84 88anti-parallel
Strand 3
P
44 49anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
124 127first strand
Strand 2
P
95 101anti-parallel
Strand 3
P
212 220anti-parallel
Strand 4
P
239 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
113 116first strand
Strand 2
P
140 143anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
260 262first strand
Strand 2
P
346 351parallel
Strand 3
P
328 335anti-parallel
Strand 4
P
282 289anti-parallel
Strand 5
P
293 298anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
311 315first strand
Strand 2
P
268 273anti-parallel
Strand 3
P
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
220 222first strand
Strand 2
P
228 231anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il