Analysis of interatomic Contacts of Structural Units in PDB entry:
1SVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SVM entry

There are 6 chains in PDB entry 1SVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 266ASP 627
B
 LYS 266ASP 627
C
 THR 265ASP 627
D
 LYS 266ASP 627
E
 LYS 266ASP 627
F
 THR 265ASP 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 1SVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
269 280Right-handed alpha
Helix 2
2
A
284 294Right-handed alpha
Helix 3
3
A
295 297Right-handed 310
Helix 4
4
A
302 307Right-handed alpha
Helix 5
5
A
310 315Right-handed alpha
Helix 6
6
A
316 328Right-handed alpha
Helix 7
7
A
332 355Right-handed alpha
Helix 8
8
A
356 376Right-handed alpha
Helix 9
9
A
383 395Right-handed alpha
Helix 10
10
A
400 415Right-handed alpha
Helix 11
11
A
431 444Right-handed alpha
Helix 12
12
A
456 462Right-handed alpha
Helix 13
13
A
463 465Right-handed 310
Helix 14
14
A
489 496Right-handed alpha
Helix 15
15
A
497 503Right-handed alpha
Helix 16
16
A
534 539Right-handed alpha
Helix 17
17
A
550 559Right-handed alpha
Helix 18
18
A
561 566Right-handed alpha
Helix 19
19
A
571 583Right-handed alpha
Helix 20
20
A
584 588Right-handed 310
Helix 21
21
A
589 591Right-handed 310
Helix 22
22
A
592 607Right-handed alpha
Helix 23
23
A
608 622Right-handed alpha
Helix 24
24
B
269 281Right-handed alpha
Helix 25
25
B
284 294Right-handed alpha
Helix 26
26
B
295 297Right-handed 310
Helix 27
27
B
302 307Right-handed alpha
Helix 28
28
B
310 315Right-handed alpha
Helix 29
29
B
316 328Right-handed alpha
Helix 30
30
B
332 355Right-handed alpha
Helix 31
31
B
356 376Right-handed alpha
Helix 32
32
B
383 395Right-handed alpha
Helix 33
33
B
400 415Right-handed alpha
Helix 34
34
B
431 444Right-handed alpha
Helix 35
35
B
453 455Right-handed 310
Helix 36
36
B
456 462Right-handed alpha
Helix 37
37
B
463 465Right-handed 310
Helix 38
38
B
480 484Right-handed 310
Helix 39
39
B
489 496Right-handed alpha
Helix 40
40
B
497 503Right-handed alpha
Helix 41
41
B
534 539Right-handed alpha
Helix 42
42
B
550 559Right-handed alpha
Helix 43
43
B
561 566Right-handed alpha
Helix 44
44
B
571 583Right-handed alpha
Helix 45
45
B
584 588Right-handed 310
Helix 46
46
B
589 607Right-handed alpha
Helix 47
47
B
608 621Right-handed alpha
Helix 48
48
C
269 280Right-handed alpha
Helix 49
49
C
284 295Right-handed alpha
Helix 50
50
C
302 307Right-handed alpha
Helix 51
51
C
310 315Right-handed alpha
Helix 52
52
C
316 328Right-handed alpha
Helix 53
53
C
332 355Right-handed alpha
Helix 54
54
C
356 376Right-handed alpha
Helix 55
55
C
383 396Right-handed alpha
Helix 56
56
C
400 415Right-handed alpha
Helix 57
57
C
431 444Right-handed alpha
Helix 58
58
C
453 455Right-handed 310
Helix 59
59
C
456 462Right-handed alpha
Helix 60
60
C
463 465Right-handed 310
Helix 61
61
C
489 495Right-handed alpha
Helix 62
62
C
497 503Right-handed alpha
Helix 63
63
C
534 539Right-handed alpha
Helix 64
64
C
550 559Right-handed alpha
Helix 65
65
C
561 566Right-handed alpha
Helix 66
66
C
571 583Right-handed alpha
Helix 67
67
C
584 588Right-handed 310
Helix 68
68
C
589 591Right-handed 310
Helix 69
69
C
592 607Right-handed alpha
Helix 70
70
C
608 622Right-handed alpha
Helix 71
71
D
269 280Right-handed alpha
Helix 72
72
D
284 294Right-handed alpha
Helix 73
73
D
295 297Right-handed 310
Helix 74
74
D
302 307Right-handed alpha
Helix 75
75
D
310 315Right-handed alpha
Helix 76
76
D
316 328Right-handed alpha
Helix 77
77
D
332 355Right-handed alpha
Helix 78
78
D
356 376Right-handed alpha
Helix 79
79
D
383 398Right-handed alpha
Helix 80
80
D
400 415Right-handed alpha
Helix 81
81
D
431 444Right-handed alpha
Helix 82
82
D
456 463Right-handed alpha
Helix 83
83
D
480 484Right-handed 310
Helix 84
84
D
489 496Right-handed alpha
Helix 85
85
D
497 503Right-handed alpha
Helix 86
86
D
534 539Right-handed alpha
Helix 87
87
D
550 559Right-handed alpha
Helix 88
88
D
561 566Right-handed alpha
Helix 89
89
D
571 583Right-handed alpha
Helix 90
90
D
584 588Right-handed 310
Helix 91
91
D
589 605Right-handed alpha
Helix 92
92
D
608 622Right-handed alpha
Helix 93
93
E
269 281Right-handed alpha
Helix 94
94
E
284 295Right-handed alpha
Helix 95
95
E
302 307Right-handed alpha
Helix 96
96
E
310 315Right-handed alpha
Helix 97
97
E
316 328Right-handed alpha
Helix 98
98
E
332 355Right-handed alpha
Helix 99
99
E
356 376Right-handed alpha
Helix 100
100
E
383 395Right-handed alpha
Helix 101
101
E
400 415Right-handed alpha
Helix 102
102
E
431 444Right-handed alpha
Helix 103
103
E
456 462Right-handed alpha
Helix 104
104
E
463 465Right-handed 310
Helix 105
105
E
480 484Right-handed 310
Helix 106
106
E
489 496Right-handed alpha
Helix 107
107
E
497 503Right-handed alpha
Helix 108
108
E
534 539Right-handed alpha
Helix 109
109
E
550 559Right-handed alpha
Helix 110
110
E
561 566Right-handed alpha
Helix 111
111
E
571 583Right-handed alpha
Helix 112
112
E
584 588Right-handed 310
Helix 113
113
E
589 607Right-handed alpha
Helix 114
114
E
608 622Right-handed alpha
Helix 115
115
F
269 280Right-handed alpha
Helix 116
116
F
284 294Right-handed alpha
Helix 117
117
F
295 297Right-handed 310
Helix 118
118
F
302 307Right-handed alpha
Helix 119
119
F
310 315Right-handed alpha
Helix 120
120
F
316 328Right-handed alpha
Helix 121
121
F
332 355Right-handed alpha
Helix 122
122
F
356 376Right-handed alpha
Helix 123
123
F
383 395Right-handed alpha
Helix 124
124
F
400 415Right-handed alpha
Helix 125
125
F
431 444Right-handed alpha
Helix 126
126
F
456 463Right-handed alpha
Helix 127
127
F
480 484Right-handed 310
Helix 128
128
F
489 496Right-handed alpha
Helix 129
129
F
497 503Right-handed alpha
Helix 130
130
F
534 539Right-handed alpha
Helix 131
131
F
550 559Right-handed alpha
Helix 132
132
F
561 566Right-handed alpha
Helix 133
133
F
571 583Right-handed alpha
Helix 134
134
F
584 588Right-handed 310
Helix 135
135
F
592 607Right-handed alpha
Helix 136
136
F
608 622Right-handed alpha
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There are 12 sheets in PDB entry 1SVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
470 472parallel
Strand 3
A
524 528parallel
Strand 4
A
421 425parallel
Strand 5
A
541 546parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
517 519anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 448first strand
Strand 2
B
470 472parallel
Strand 3
B
524 528parallel
Strand 4
B
421 425parallel
Strand 5
B
541 546parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 510first strand
Strand 2
B
516 519anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
445 448first strand
Strand 2
C
469 472parallel
Strand 3
C
524 528parallel
Strand 4
C
421 425parallel
Strand 5
C
541 546parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
507 510first strand
Strand 2
C
515 519anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
446 448first strand
Strand 2
D
470 472parallel
Strand 3
D
524 528parallel
Strand 4
D
421 425parallel
Strand 5
D
541 546parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
507 510first strand
Strand 2
D
515 519anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
445 448first strand
Strand 2
E
469 472parallel
Strand 3
E
524 528parallel
Strand 4
E
421 425parallel
Strand 5
E
541 546parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
507 510first strand
Strand 2
E
516 519anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
446 448first strand
Strand 2
F
470 472parallel
Strand 3
F
524 528parallel
Strand 4
F
421 425parallel
Strand 5
F
541 546parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
507 509first strand
Strand 2
F
517 519anti-parallel
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