Analysis of interatomic Contacts of Structural Units in PDB entry:
1SVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SVU entry

There are 2 chains in PDB entry 1SVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 327
B
 MET 1TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1SVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 31Right-handed alpha
Helix 2
2
A
42 54Right-handed alpha
Helix 3
3
A
60 64Right-handed 310
Helix 4
4
A
100 111Right-handed alpha
Helix 5
5
A
123 125Right-handed 310
Helix 6
6
A
127 129Right-handed 310
Helix 7
7
A
130 142Right-handed alpha
Helix 8
8
A
155 158Right-handed 310
Helix 9
9
A
173 176Right-handed 310
Helix 10
10
A
191 196Right-handed alpha
Helix 11
11
A
198 206Right-handed 310
Helix 12
12
A
275 283Right-handed alpha
Helix 13
13
A
294 305Right-handed alpha
Helix 14
14
A
307 323Right-handed alpha
Helix 15
15
B
22 29Right-handed alpha
Helix 16
16
B
30 32Right-handed 310
Helix 17
17
B
42 54Right-handed alpha
Helix 18
18
B
65 69Right-handed 310
Helix 19
19
B
103 111Right-handed alpha
Helix 20
20
B
123 125Right-handed 310
Helix 21
21
B
126 131Right-handed 310
Helix 22
22
B
132 143Right-handed alpha
Helix 23
23
B
155 157Right-handed 310
Helix 24
24
B
191 196Right-handed alpha
Helix 25
25
B
198 204Right-handed 310
Helix 26
26
B
275 283Right-handed alpha
Helix 27
27
B
294 305Right-handed alpha
Helix 28
28
B
307 324Right-handed alpha
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There are 6 sheets in PDB entry 1SVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
13 17parallel
Strand 3
A
74 77parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 121first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
146 153anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
248 249parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
230 232anti-parallel
Strand 3
A
240 242anti-parallel
Strand 4
A
264 266parallel
Strand 5
A
271 273anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
13 17parallel
Strand 3
B
74 78parallel
Strand 4
B
115 121parallel
Strand 5
B
164 171anti-parallel
Strand 6
B
148 153anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
270 272anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
240 242parallel
Strand 5
B
228 231anti-parallel
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