Analysis of interatomic Contacts of Structural Units in PDB entry:
1SVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SVV entry

There are 2 chains in PDB entry 1SVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 15LEU 354
B
 PRO 15ALA 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1SVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 38Right-handed alpha
Helix 2
2
A
48 63Right-handed alpha
Helix 3
3
A
74 87Right-handed alpha
Helix 4
4
A
99 104Right-handed alpha
Helix 5
5
A
107 112Right-handed alpha
Helix 6
6
A
127 138Right-handed alpha
Helix 7
7
A
162 176Right-handed alpha
Helix 8
8
A
186 192Right-handed alpha
Helix 9
9
A
199 207Right-handed alpha
Helix 10
10
A
229 233Right-handed 310
Helix 11
11
A
235 243Right-handed alpha
Helix 12
12
A
250 261Right-handed alpha
Helix 13
13
A
264 287Right-handed alpha
Helix 14
14
A
306 313Right-handed alpha
Helix 15
15
A
340 354Right-handed alpha
Helix 16
16
B
27 38Right-handed alpha
Helix 17
17
B
48 63Right-handed alpha
Helix 18
18
B
74 87Right-handed alpha
Helix 19
19
B
99 104Right-handed alpha
Helix 20
20
B
107 112Right-handed alpha
Helix 21
21
B
127 138Right-handed alpha
Helix 22
22
B
162 177Right-handed alpha
Helix 23
23
B
186 193Right-handed alpha
Helix 24
24
B
199 207Right-handed alpha
Helix 25
25
B
229 233Right-handed 310
Helix 26
26
B
235 243Right-handed alpha
Helix 27
27
B
250 261Right-handed alpha
Helix 28
28
B
264 287Right-handed alpha
Helix 29
29
B
306 313Right-handed alpha
Helix 30
30
B
340 356Right-handed alpha
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There are 8 sheets in PDB entry 1SVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
316 317parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
223 227anti-parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
179 183parallel
Strand 5
A
145 152parallel
Strand 6
A
91 96parallel
Strand 7
A
116 119parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
328 334anti-parallel
Strand 3
A
303 305anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
328 334anti-parallel
Strand 3
A
319 324anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
316 317parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
223 227anti-parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
179 184parallel
Strand 5
B
145 152parallel
Strand 6
B
91 96parallel
Strand 7
B
116 119parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
328 334anti-parallel
Strand 3
B
303 305anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
328 334anti-parallel
Strand 3
B
319 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il