Analysis of interatomic Contacts of Structural Units in PDB entry:
1SVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SVW entry

There are 2 chains in PDB entry 1SVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 195
B
 MET 1ARG 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1SVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 45Right-handed alpha
Helix 2
2
A
87 100Right-handed alpha
Helix 3
3
A
120 133Right-handed alpha
Helix 4
4
A
143 147Right-handed 310
Helix 5
5
A
148 150Right-handed 310
Helix 6
6
A
151 163Right-handed alpha
Helix 7
7
A
181 194Right-handed alpha
Helix 8
8
B
14 18Right-handed 310
Helix 9
9
B
35 44Right-handed alpha
Helix 10
10
B
88 101Right-handed alpha
Helix 11
11
B
120 134Right-handed alpha
Helix 12
12
B
143 147Right-handed 310
Helix 13
13
B
151 163Right-handed alpha
Helix 14
14
B
181 195Right-handed alpha
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There are 3 sheets in PDB entry 1SVW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
71 75anti-parallel
Strand 4
A
25 30parallel
Strand 5
A
106 114parallel
Strand 6
A
140 142parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
62 67anti-parallel
Strand 3
B
11 12anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
62 67anti-parallel
Strand 3
B
71 75anti-parallel
Strand 4
B
25 30parallel
Strand 5
B
106 114parallel
Strand 6
B
139 142parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il