Analysis of interatomic Contacts of Structural Units in PDB entry:
1SVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SVX entry

There are 2 chains in PDB entry 1SVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12LEU 168
B
 GLY 5GLY 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1SVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
26 36Right-handed alpha
Helix 3
3
A
49 58Right-handed alpha
Helix 4
4
A
59 69Right-handed alpha
Helix 5
5
A
82 90Right-handed alpha
Helix 6
6
A
92 102Right-handed alpha
Helix 7
7
A
115 124Right-handed alpha
Helix 8
8
A
125 135Right-handed alpha
Helix 9
9
A
148 156Right-handed alpha
Helix 10
10
A
158 165Right-handed alpha
Helix 11
11
B
16 32Right-handed alpha
Helix 12
12
B
42 51Right-handed alpha
Helix 13
13
B
64 73Right-handed alpha
Helix 14
14
B
82 87Right-handed alpha
Helix 15
15
B
90 95Right-handed alpha
Helix 16
16
B
128 130Right-handed 310
Helix 17
17
B
131 141Right-handed alpha
Helix 18
18
B
153 164Right-handed alpha
Helix 19
19
B
185 201Right-handed alpha
Helix 20
20
B
209 219Right-handed alpha
Helix 21
21
B
228 230Right-handed 310
Helix 22
22
B
231 239Right-handed alpha
Helix 23
23
B
272 283Right-handed alpha
Helix 24
24
B
286 297Right-handed alpha
Helix 25
25
B
304 312Right-handed alpha
Helix 26
26
B
314 327Right-handed alpha
Helix 27
27
B
335 352Right-handed alpha
Helix 28
28
B
356 368Right-handed alpha
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There are 5 sheets in PDB entry 1SVX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
6 10parallel
Strand 3
B
59 63parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
106 111anti-parallel
Strand 6
B
301 302anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
6 10parallel
Strand 3
B
59 63parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
328 329parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
222 227parallel
Strand 3
B
114 118anti-parallel
Strand 4
B
242 245anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 172first strand
Strand 2
B
175 182anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
253 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il