Analysis of interatomic Contacts of Structural Units in PDB entry:
1T0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T0J entry

There are 3 chains in PDB entry 1T0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 41LYS 136
B
 PHE 210THR 425
C
 GLN 428GLN 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1T0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 56Right-handed alpha
Helix 2
2
A
73 77Right-handed 310
Helix 3
3
A
120 136Right-handed alpha
Helix 4
4
B
239 257Right-handed alpha
Helix 5
5
B
269 273Right-handed 310
Helix 6
6
B
295 311Right-handed alpha
Helix 7
7
B
325 329Right-handed 310
Helix 8
8
B
345 356Right-handed alpha
Helix 9
9
B
363 376Right-handed alpha
Helix 10
10
B
378 383Right-handed alpha
Helix 11
11
B
391 411Right-handed alpha
Helix 12
12
B
412 416Right-handed 310
Helix 13
13
C
428 443Right-handed alpha
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There are 2 sheets in PDB entry 1T0J. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
62 66anti-parallel
Strand 5
B
220 223anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 266first strand
Strand 2
B
315 320parallel
Strand 3
B
229 232parallel
Strand 4
B
337 341parallel
Strand 5
B
385 387parallel
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