Analysis of interatomic Contacts of Structural Units in PDB entry:
1T0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T0O entry

There is 1 chain in PDB entry 1T0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1TRP 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1T0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 23Right-handed alpha
Helix 2
2
A
27 41Right-handed alpha
Helix 3
3
A
42 47Right-handed alpha
Helix 4
4
A
77 89Right-handed alpha
Helix 5
5
A
113 125Right-handed alpha
Helix 6
6
A
137 141Right-handed 310
Helix 7
7
A
155 159Right-handed 310
Helix 8
8
A
174 177Right-handed 310
Helix 9
9
A
178 193Right-handed alpha
Helix 10
10
A
209 214Right-handed alpha
Helix 11
11
A
215 217Right-handed 310
Helix 12
12
A
230 243Right-handed alpha
Helix 13
13
A
244 248Right-handed 310
Helix 14
14
A
267 281Right-handed alpha
Helix 15
15
A
295 303Right-handed alpha
Helix 16
16
A
304 312Right-handed alpha
Helix 17
17
A
367 371Right-handed 310
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There are 3 sheets in PDB entry 1T0O. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
220 222parallel
Strand 3
A
199 202parallel
Strand 4
A
128 132parallel
Strand 5
A
92 98parallel
Strand 6
A
50 52parallel
Strand 7
A
14 17parallel
Strand 8
A
285 287parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
341 344anti-parallel
Strand 3
A
350 355anti-parallel
Strand 4
A
405 413anti-parallel
Strand 5
A
379 383anti-parallel
Strand 6
A
389 393anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
396 400anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il