Analysis of interatomic Contacts of Structural Units in PDB entry:
1T0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T0T entry

There are 5 chains in PDB entry 1T0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
V
 GLN 6VAL 248
W
 GLN 6VAL 248
X
 GLN 6VAL 248
Y
 GLN 6VAL 248
Z
 GLN 6VAL 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 1T0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
V
21 28Right-handed alpha
Helix 2
2
V
29 53Right-handed alpha
Helix 3
3
V
78 92Right-handed alpha
Helix 4
4
V
93 96Right-handed 310
Helix 5
5
V
120 123Right-handed 310
Helix 6
6
V
124 132Right-handed alpha
Helix 7
7
V
157 159Right-handed 310
Helix 8
8
V
160 177Right-handed alpha
Helix 9
9
V
206 218Right-handed alpha
Helix 10
10
V
219 225Right-handed alpha
Helix 11
11
V
238 240Right-handed 310
Helix 12
12
V
241 246Right-handed alpha
Helix 13
13
W
21 28Right-handed alpha
Helix 14
14
W
29 53Right-handed alpha
Helix 15
15
W
78 91Right-handed alpha
Helix 16
16
W
93 96Right-handed 310
Helix 17
17
W
120 123Right-handed 310
Helix 18
18
W
124 132Right-handed alpha
Helix 19
19
W
157 159Right-handed 310
Helix 20
20
W
160 177Right-handed alpha
Helix 21
21
W
206 218Right-handed alpha
Helix 22
22
W
219 225Right-handed alpha
Helix 23
23
W
238 240Right-handed 310
Helix 24
24
W
241 247Right-handed alpha
Helix 25
25
X
21 28Right-handed alpha
Helix 26
26
X
29 53Right-handed alpha
Helix 27
27
X
78 92Right-handed alpha
Helix 28
28
X
93 96Right-handed 310
Helix 29
29
X
120 123Right-handed 310
Helix 30
30
X
124 132Right-handed alpha
Helix 31
31
X
157 159Right-handed 310
Helix 32
32
X
160 177Right-handed alpha
Helix 33
33
X
206 218Right-handed alpha
Helix 34
34
X
219 225Right-handed alpha
Helix 35
35
X
238 240Right-handed 310
Helix 36
36
X
241 247Right-handed alpha
Helix 37
37
Y
21 28Right-handed alpha
Helix 38
38
Y
29 53Right-handed alpha
Helix 39
39
Y
78 91Right-handed alpha
Helix 40
40
Y
93 96Right-handed 310
Helix 41
41
Y
120 123Right-handed 310
Helix 42
42
Y
124 132Right-handed alpha
Helix 43
43
Y
157 159Right-handed 310
Helix 44
44
Y
160 177Right-handed alpha
Helix 45
45
Y
206 218Right-handed alpha
Helix 46
46
Y
219 225Right-handed alpha
Helix 47
47
Y
238 240Right-handed 310
Helix 48
48
Y
241 246Right-handed alpha
Helix 49
49
Z
21 27Right-handed alpha
Helix 50
50
Z
29 53Right-handed alpha
Helix 51
51
Z
78 92Right-handed alpha
Helix 52
52
Z
93 96Right-handed 310
Helix 53
53
Z
120 123Right-handed 310
Helix 54
54
Z
124 132Right-handed alpha
Helix 55
55
Z
157 159Right-handed 310
Helix 56
56
Z
160 177Right-handed alpha
Helix 57
57
Z
206 218Right-handed alpha
Helix 58
58
Z
219 225Right-handed alpha
Helix 59
59
Z
238 240Right-handed 310
Helix 60
60
Z
241 246Right-handed alpha
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There are 10 sheets in PDB entry 1T0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
226 228first strand
Strand 2
V
140 148anti-parallel
Strand 3
V
232 236anti-parallel
Strand 4
V
57 63anti-parallel
Strand 5
V
70 76anti-parallel
Strand 6
V
8 20anti-parallel
Strand 7
V
98 110anti-parallel
Strand 8
V
183 188anti-parallel
Strand 9
V
197 203anti-parallel
Strand 10
V
140 148anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
150 151first strand
Strand 2
V
154 155anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
226 228first strand
Strand 2
W
140 148anti-parallel
Strand 3
W
232 236anti-parallel
Strand 4
W
57 63anti-parallel
Strand 5
W
70 76anti-parallel
Strand 6
W
8 20anti-parallel
Strand 7
W
98 110anti-parallel
Strand 8
W
183 188anti-parallel
Strand 9
W
197 203anti-parallel
Strand 10
W
140 148anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
150 151first strand
Strand 2
W
154 155anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
226 228first strand
Strand 2
X
140 148anti-parallel
Strand 3
X
232 236anti-parallel
Strand 4
X
57 63anti-parallel
Strand 5
X
70 76anti-parallel
Strand 6
X
8 20anti-parallel
Strand 7
X
98 110anti-parallel
Strand 8
X
183 188anti-parallel
Strand 9
X
197 203anti-parallel
Strand 10
X
140 148anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
150 151first strand
Strand 2
X
154 155anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
226 228first strand
Strand 2
Y
140 148anti-parallel
Strand 3
Y
232 236anti-parallel
Strand 4
Y
57 63anti-parallel
Strand 5
Y
70 76anti-parallel
Strand 6
Y
8 20anti-parallel
Strand 7
Y
98 110anti-parallel
Strand 8
Y
183 188anti-parallel
Strand 9
Y
197 203anti-parallel
Strand 10
Y
140 148anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
150 151first strand
Strand 2
Y
154 155anti-parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
226 228first strand
Strand 2
Z
140 148anti-parallel
Strand 3
Z
232 236anti-parallel
Strand 4
Z
57 63anti-parallel
Strand 5
Z
70 76anti-parallel
Strand 6
Z
8 20anti-parallel
Strand 7
Z
98 110anti-parallel
Strand 8
Z
183 188anti-parallel
Strand 9
Z
197 203anti-parallel
Strand 10
Z
140 148anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
150 151first strand
Strand 2
Z
154 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il